miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 123 bits (62), Expect = 4e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 13 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 72
Query: 78 ctgcacctga 87
||||||||||
Sbjct: 73 ctgcacctga 82
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||
Sbjct: 8 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 67
Query: 73 aagttctgcacctgaa 88
||||||||||||||||
Sbjct: 68 aagttctgcacctgaa 83
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 109 bits (55), Expect = 7e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 6 tctggtgaggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcac 65
||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tctggcgaggtgcagagcttagctgattggtgaacagtgattg-ttgttgctttgttcac 59
Query: 66 agtggctaagttctgcacctgaa 88
|||||||||||||||||||||||
Sbjct: 60 agtggctaagttctgcacctgaa 82
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 17 gcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagt 76
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 12 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 71
Query: 77 tctgc 81
|||||
Sbjct: 72 tctgc 76
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 97.6 bits (49), Expect = 3e-20
Identities = 69/75 (92%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 64
Query: 73 aagttctgcacctga 87
|||||||||| ||||
Sbjct: 65 aagttctgcatctga 79
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 tttgttcacagtggctaagttctgcacc 84
||||||||||||||||||||||| ||||
Sbjct: 52 tttgttcacagtggctaagttcttcacc 79
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 tgttcacagtggctaagttctgcacct 85
|||||||||||||||||||| ||||||
Sbjct: 57 tgttcacagtggctaagttccgcacct 83
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 ttgttcacagtggctaagttctgcacctga 87
||||||||||||||||||||| | ||||||
Sbjct: 53 ttgttcacagtggctaagttcagtacctga 82
