miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 60
Query: 66 ca 67
||
Sbjct: 61 ca 62
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 91.7 bits (46), Expect = 1e-18
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 65
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaagccacagat-gggctttcagtcggatgtttg 59
Query: 66 ca 67
||
Sbjct: 60 ca 61
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgttt 64
|||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttt 59
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 60.0 bits (30), Expect = 4e-09
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 65
||||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg-aggggccaat-gggctttcagtcggatgtttg 58
Query: 66 ca 67
||
Sbjct: 59 ca 60
>RF00131;mir-30;AAVX01365666.1/262-201 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 65
||||||||||| |||||||||||||| || |||||| | |||||||||| ||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaacagcagctccagctttcagtccgatgtttg 60
Query: 66 c 66
|
Sbjct: 61 c 61
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtg 32
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg 27
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gctttcagtcggatgtttgca 67
|||||||||||||||||||||
Sbjct: 39 gctttcagtcggatgtttgca 59
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tggggctttcagtcggatgtttgca 67
|||||||||||||||||||||||||
Sbjct: 37 tggggctttcagtcggatgtttgca 61
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctg 30
|||||||||||| ||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 48.1 bits (24), Expect = 1e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtg-aagcagcagatggggctttcagtcggatgttt 64
|||||||||||| |||||||||||||| ||| || | |||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgcaaggctca-aaggggctttcagtcggatgttt 59
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 gatggggctttcagtcggatgtttgca 67
||||| |||||||||||||||||||||
Sbjct: 34 gatggagctttcagtcggatgtttgca 60
>RF00131;mir-30;BX323874.4/7995-7933 7955:Danio rerio (zebrafish)
Length = 63
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtg 32
||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtg 27
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtg 32
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtg 27
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 gggctttcagtcggatgtttgca 67
|||||||||||||||||||||||
Sbjct: 42 gggctttcagtcggatgtttgca 64
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 gggctttcagtcggatgtttgca 67
|||||||||||||||||||||||
Sbjct: 41 gggctttcagtcggatgtttgca 63
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctg 30
|||||||||||| ||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04077266.1/8695-8638 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgtg 32
||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtg 27
>RF00131;mir-30;AAPN01319291.1/18051-18110 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgt 26
>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
(American pika)
Length = 60
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;ABRQ01189397.1/6501-6442 9813:Procavia capensis
(cape rock hyrax)
Length = 60
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;ABQF01032194.1/21176-21232 59729:Taeniopygia
guttata
Length = 57
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;AADN02022374.1/21255-21311 9031:Gallus gallus
(chicken)
Length = 57
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;CAAB01000020.1/215834-215777 31033:Takifugu
rubripes
Length = 58
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;AANH01002465.1/73021-72964 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 58
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctg 30
|||||||||||| ||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatcctcgactggaagctg 30
|||||||||||| ||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
