miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 123 bits (62), Expect = 4e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttta 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttta 60
Query: 79 ca 80
||
Sbjct: 61 ca 62
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtga-ggtgtcagcgggggctttcagtcggatgttt 77
||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgggattttgtcagtgtgggctttcagtcggatgttt 60
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtgaggtg-tcagcgggggctttcagtcggatgttt 77
|||||||||||||||||||||||||| | ||| |||| || ||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaagtgttcag-aggagctttcagtcggatgttt 59
Query: 78 aca 80
|||
Sbjct: 60 aca 62
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttt 77
|||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgttt 59
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttt 77
|||||||||||| ||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaggggcca--atgggctttcagtcggatgttt 57
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtg 45
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtg 27
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtg 45
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtg 27
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctg 43
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctg 43
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctg 43
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ggctttcagtcggatgtttaca 80
||||||||||||||||||||||
Sbjct: 42 ggctttcagtcggatgtttaca 63
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctg 43
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtga 46
|||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtga 28
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 tgtaaacatccttgactggaagctgtg 45
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg 27
