miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 8 gtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaat 60
Query: 68 cagcaagtatactgccctagaagtgctacac 98
|||||||||||||||||||||||||||||||
Sbjct: 61 cagcaagtatactgccctagaagtgctacac 91
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 79.8 bits (40), Expect = 7e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagc 71
|||||||| |||||||||||||||||||||||||||| | | | || ||||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagc 63
Query: 72 aagtatactgcc 83
||||||||||||
Sbjct: 64 aagtatactgcc 75
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 12 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagc 71
|||||||| |||||||||||||||||||||||||| ||| | || |||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgtgcagtcagaaa--aagcaatcagc 62
Query: 72 aagtatactgcc 83
||||||||||||
Sbjct: 63 aagtatactgcc 74
