miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
Query: 61 ttcactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 ttcactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 89.7 bits (45), Expect = 5e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 4 cttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaattc 63
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 4 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 63
Query: 64 actgccatcaaaacaaggcac 84
||||||| |||||||||||||
Sbjct: 64 actgccaccaaaacaaggcac 84
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 79.8 bits (40), Expect = 5e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattggaccatcccgcccgcaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 73.8 bits (37), Expect = 3e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacc-cagcgccccacaatcactaa 59
||||| |||||| |||||||||| ||||||||||||||| | | || |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtacctcggtgctttacaatcactaa 60
Query: 60 attcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 ctccactgccatcaaaacaaggcac 85
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||||||||||||||||| | | || ||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattgtattctactgcctgcaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
||||| |||||| |||||||||| |||||||||||||| | | | |||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 ttcactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 3 gcttggtttgcaggcagtgtagttagctgattgt 36
|||||||||| |||||||||||||||||||||||
Sbjct: 3 gcttggtttgtaggcagtgtagttagctgattgt 36
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 caggcagtgtagttagctgattg 35
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcagtgtagttagctgattg 35
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
