miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 agcctggttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcctggttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacac 60
Query: 61 agccaggtaaaaag 74
||||||||||||||
Sbjct: 61 agccaggtaaaaag 74
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 95.6 bits (48), Expect = 7e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 4 ctggttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagc 63
|||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 5 ctggttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagc 64
Query: 64 caggtaaa 71
||||||||
Sbjct: 65 caggtaaa 72
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 4 ctggttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagc 63
|||||||| ||||||||||||||||||||||| | || |||||||||||||||||| ||
Sbjct: 5 ctggttactaggcagtgtagttagctgattgctattagtaccaatcactaaccacacggc 64
Query: 64 caggtaaaaag 74
|||||||||||
Sbjct: 65 caggtaaaaag 75
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 agcctggttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacac 60
||||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct: 2 agcctggttgccaggcagtgtagttagctgattgcccaaagcaacaatcactagccacac 61
Query: 61 agccaggtaaaaag 74
|||||||||||||
Sbjct: 62 ggccaggtaaaaag 75
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | | ||||||||||| ||||||||||||
Sbjct: 8 gttactaggcagtgtagttagctgattgctattaacaccaatcactagccacacagccag 67
Query: 67 gtaaaaag 74
||||||||
Sbjct: 68 gtaaaaag 75
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | | |||||||||||||||||| |||||
Sbjct: 8 gttactaggcagtgtagttagctgattgctgaccgtaccaatcactaaccacacggccag 67
Query: 67 gtaaaaag 74
||||||||
Sbjct: 68 gtaaaaag 75
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 gcctggttaccaggcagtgtagttagctgattg 34
|||||||| ||||||||||||||||||||||||
Sbjct: 3 gcctggttgccaggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 caggcagtgtagttagctgattg 34
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
