miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 6 tggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatg 60
Query: 66 ggtctgtgtcag 77
||||||||||||
Sbjct: 61 ggtctgtgtcag 72
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctg 71
||||||||||||||||||||||| |||||| ||| ||||||||||| ||| ||||||||
Sbjct: 7 aaacccgtagatccgatcttgtggtgaaattgacttcacaagctcgcctctttgggtctg 66
Query: 72 tgtcag 77
||||||
Sbjct: 67 tgtcag 72
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggt 68
|||||||||||||||||||||||||| |||| || || || |||||||| ||||||||||
Sbjct: 4 cataaacccgtagatccgatcttgtggtgaagtggaccgcgcaagctcgtttctatgggt 63
Query: 69 ctgtg 73
|||||
Sbjct: 64 ctgtg 68
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tggcataaacccgtagatccgatcttgtg 34
||||| |||||||||||||||||||||||
Sbjct: 1 tggcacaaacccgtagatccgatcttgtg 29
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtgttg 37
||||||||||||||||||| |||||||||
Sbjct: 4 cataaacccgtagatccgaacttgtgttg 32
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctgt 72
|||||||||||||||||||||| | | | | ||||||||||| |||||||||||| |
Sbjct: 8 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 67
Query: 73 gtc 75
|||
Sbjct: 68 gtc 70
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgatcttgtg 29
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgttga 38
||||||||||||||| ||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgttga 33
