miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 3 tatcctttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcctttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgat 60
Query: 63 aactgaagaatggtg 77
|||||||||||||||
Sbjct: 61 aactgaagaatggtg 75
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 6 cctttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataac 65
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct: 4 cctttttcggttatcatggtaccgatgctgtagctctgaaaggtacagtactgtgatagc 63
Query: 66 tgaagaatgg 75
||||||||||
Sbjct: 64 tgaagaatgg 73
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 44 aaaggtacagtactgtgataactgaagaatgg 75
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;BAAF04023117.1/37025-37099 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 9 ttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataactga 68
||||| |||||||||||||||||||||| | | | | |||||||||| ||||||||||
Sbjct: 7 ttttcagttatcatggtaccggtgctgtgtgcctatcaagtacagtactatgataactga 66
Query: 69 aga 71
|||
Sbjct: 67 aga 69
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 45 aaggtacagtactgtgataactgaagaatgg 75
|||||||||||||||||||||||||| ||||
Sbjct: 43 aaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 aggtacagtactgtgataactgaaga 71
|||||||||||||||||| |||||||
Sbjct: 43 aggtacagtactgtgatagctgaaga 68
