miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 4 ctgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtac 60
Query: 64 agggctatgaaagaacag 81
||||||||||||||||||
Sbjct: 61 agggctatgaaagaacag 78
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 9 ctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggc 68
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
Query: 69 tatgaaagaac 79
|||||||||||
Sbjct: 66 tatgaaagaac 76
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 4 ctgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtac 63
||||| |||||||||||||||||||||| ||||| || | | ||||||||||||||||
Sbjct: 1 ctgtgttttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtac 60
Query: 64 agggctatgaaag 76
|||||||||||||
Sbjct: 61 agggctatgaaag 73
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 75.8 bits (38), Expect = 8e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 7 tgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagg 66
|||||||||||||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 63
Query: 67 gctatgaaag 76
||||| ||||
Sbjct: 64 gctatcaaag 73
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 6 gtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacag 65
|||| ||| ||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 3 gtgccttcggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacag 62
Query: 66 ggctatgaa 74
|||||||||
Sbjct: 63 ggctatgaa 71
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatgaa 74
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 11 ttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggcta 70
|||||| ||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct: 8 ttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggcta 67
Query: 71 tgaa 74
||||
Sbjct: 68 tgaa 71
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatga 73
|||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctatgaaagaacag 81
||||||||||||||||||||||||||||| ||||
Sbjct: 45 tcaagcagcattgtacagggctatgaaagcacag 78
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggctatgaa 74
|||||||||||||| |||||||| || | | |||||||||||||||||||||||| ||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 75 ag 76
||
Sbjct: 72 ag 73
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 8 gctttcagcttctttacagtgctgccttgttgcgttcatgt-caagcagcattgtacagg 66
||||| ||| |||||||||||||||||||| | ||| || ||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtct-gatcaggttcaagcagcattgtacagg 63
Query: 67 gctatga 73
|||||||
Sbjct: 64 gctatga 70
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctatgaa 74
|||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 5 tgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtaca 64
|||||| | ||||||||||||||| |||||||| || | |||||||||||||||||
Sbjct: 2 tgtgctgtgagcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtaca 61
Query: 65 gggctat 71
|||||||
Sbjct: 62 gggctat 68
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctatga 73
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctatga 73
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggct 69
||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggct 66
