miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 3 ctttgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtac 60
Query: 63 agggctatcaaagcatgg 80
||||||||||||||||||
Sbjct: 61 agggctatcaaagcatgg 78
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 13 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatca 72
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctatca 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatcaa 73
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 74 agc 76
|||
Sbjct: 72 agc 74
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 8 ctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggc 67
|||||||||||||||||||| |||||||| |||| || |||||||||||||||||||||
Sbjct: 6 ctttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggc 65
Query: 68 tatcaaag 75
||| ||||
Sbjct: 66 tatgaaag 73
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 6 tgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagg 65
|||||||||||||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct: 4 tgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagg 63
Query: 66 gctatcaaag 75
||||| ||||
Sbjct: 64 gctatgaaag 73
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 70
|||||||||||||| ||||||||| | || || ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 68
|||||| |||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 9 tttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 68
||||||||||||||||||| || ||||| |||| | ||||||||||||||||||||||
Sbjct: 7 tttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggct 66
Query: 69 atcaaag 75
|| ||||
Sbjct: 67 atgaaag 73
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 70
|||||| ||||||| |||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 14 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 70
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 3 ctttgctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtac 62
|||||| |||||| ||||||| ||| ||||||||||| | | ||||||||||||||||
Sbjct: 1 ctttgcgttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtac 60
Query: 63 agggctat 70
||||||||
Sbjct: 61 agggctat 68
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 11 tcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 70
||||| ||||||| ||| |||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 gctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacaggg 66
||||| ||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtctgatcaggttcaagcagcattgtacaggg 64
Query: 67 ctat 70
||||
Sbjct: 65 ctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 7 gctttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacaggg 66
||||| ||| ||||||||||| |||||||| | | ||||||||||||||||||||||
Sbjct: 5 gcttttagcctctttacagtgctgccttgtcttctcgcgttcaagcagcattgtacaggg 64
Query: 67 ctat 70
||||
Sbjct: 65 ctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 tcaagcagcattgtacagggctatcaaagca 77
|||||||||||||||||||||||| ||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaaagca 75
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tcaagcagcattgtacagggctat 70
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
