miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 109 bits (55), Expect = 5e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 3 gagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacacta 62
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 63 aatagctactg 73
|||||||||||
Sbjct: 63 aatagctactg 73
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 61 taaatagctac 71
|||||||||||
Sbjct: 61 taaatagctac 71
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatctatcaaacgccattatcacac 60
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 61 taaatagctactg 73
|||| ||||||||
Sbjct: 61 taaacagctactg 73
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatct---atcaaacgccattatca 57
||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 58
Query: 58 cactaaatagc 68
|||||||||||
Sbjct: 59 cactaaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 ctatggagtgtgacaatggtgtttgtgtccaat-ctatcaaacgccattatcacactaaa 64
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 6 ctatggagtgtgacaatggtgtttgtaatcactgacatcaaacgccattatcacactaaa 65
Query: 65 ta 66
||
Sbjct: 66 ta 67
>RF00684;mir-122;AAGU02115256.1/941-1011 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 tatcacactaaatagctactg 73
|||||||||||||||||||||
Sbjct: 50 tatcacactaaatagctactg 70
