miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 159 bits (80), Expect = 8e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 3 ccccagcgttttgtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccccagcgttttgtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcag 60
Query: 63 tgaatgccaaagtttggggc 82
||||||||||||||||||||
Sbjct: 61 tgaatgccaaagtttggggc 80
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 75.8 bits (38), Expect = 9e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcagtgaatgccaa 72
|||||||| || |||||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 75.8 bits (38), Expect = 9e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcagtgaatgccaa 72
|||||||| || |||||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcagtgaatgccaa 72
|||||||| || ||||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtcttacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaatgtc-acacgattaaggcacgcagtgaatgccaa 72
|||||||| || |||||||||||||| || | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaatg-tcacacgattaaggcacgcagtgaatgccaa 72
|||||||| || ||||||||||||||| | | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 tttgtgttcactgcagaccttgatttaatgtcac-acgattaaggcacgcagtgaatgcc 70
||||||||||| | |||||||||||||| ||| || |||||||||||| |||||||||
Sbjct: 10 tttgtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgcc 69
Query: 71 aa 72
||
Sbjct: 70 aa 71
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaa-tgtc-acacgattaaggcacgcagtgaatgccaa 72
|||||||| || ||||||||||||| |||| | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 72
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 15 gtgttcactgcagaccttgatttaa-tgtc-acacgattaaggcacgcagtgaatgccaa 72
|||||||| || ||||||||||||| |||| | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 72
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 27 gaccttgatttaatgtc-acacgattaaggcacgcagtgaatgccaa 72
||||||||||| |||| |||| |||||||||||| |||||||||||
Sbjct: 25 gaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaa 71
