miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 123 bits (62), Expect = 4e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 6 tgacggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 65
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaa 60
Query: 66 taatgc 71
||||||
Sbjct: 61 taatgc 66
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 117 bits (59), Expect = 2e-26
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 13 ccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8 ccattattacttttggtacgcgctgtgccacttcaaactcgtaccgtgagtaataatgcg 67
Query: 73 ctg 75
|||
Sbjct: 68 ctg 70
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 115 bits (58), Expect = 9e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 gcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatg 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6 gcccattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatg 65
Query: 71 cg 72
||
Sbjct: 66 cg 67
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 111 bits (56), Expect = 1e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcgc 73
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgcgc 68
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 109 bits (55), Expect = 6e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgcg 72
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacgtcaaactcgtaccgtgagtaataatgcg 67
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacacttcaaactcgta-ccgtgagtaataatgcg 72
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaacctcgtatgggtgagtaataatgcg 68
Query: 73 ctgt 76
||||
Sbjct: 69 ctgt 72
>RF00701;mir-126;BAAE01255215.1/350-278 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 13 ccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 71
|||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 8 ccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;EU221177.1/65651-65724 8030:Salmo salar (Atlantic
salmon)
Length = 74
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 14 cattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaataatgcg 72
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgca 68
Query: 73 ctgtgg 78
||||||
Sbjct: 69 ctgtgg 74
