miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 60
Query: 64 aaaagggcattggctggca 82
|||||||||||||||||||
Sbjct: 61 aaaagggcattggctggca 79
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 6 ttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaa 65
||||||| |||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 1 ttgtccaaagccctttttctgttgtactactgtgaaatcagatgagcagtgcaatattaa 60
Query: 66 aagggcattggctg 79
||||||||||||||
Sbjct: 61 aagggcattggctg 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 63
||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1 tgttgtccactgccctttttctgttgcactactggacattgggatgagcagtgcaatatt 60
Query: 64 aaaagggcattggctg 79
||||||||||||||||
Sbjct: 61 aaaagggcattggctg 76
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 6 ttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaa 65
||||||| ||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct: 3 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 62
Query: 66 aagggcattggctg 79
||||||||||||||
Sbjct: 63 aagggcattggctg 76
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 89.7 bits (45), Expect = 5e-18
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactg-gcaattatgatgagcagtgcaatat 62
||||| |||| ||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 1 tgttgaccagggccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatat 59
Query: 63 taaaagggcattggctg 79
|||||||||||||||||
Sbjct: 60 taaaagggcattggctg 76
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 63
||||||||| |||||||| || ||| |||||||| ||| ||||||||||||||||||
Sbjct: 1 tgttgtccactgcccttttcctcttgcactactggacattgagatgagcagtgcaatatt 60
Query: 64 aaaagggcattggctg 79
||||||||||||||||
Sbjct: 61 aaaagggcattggctg 76
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaa-ttatgatgagcagtgcaatat 62
|||||||| | |||||||| |||||||||||||| || || | | |||||||||||||
Sbjct: 1 tgttgtccggggcccttttcatgttgtactactgggaagttgagttaagcagtgcaatat 60
Query: 63 taaaagggcattggctggca 82
||||||||||||||||||||
Sbjct: 61 taaaagggcattggctggca 80
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 63.9 bits (32), Expect = 3e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 63
||||||||| ||||||||||||||| |||||||| | | |||||||||||||||
Sbjct: 1 tgttgtccactgccctttttctgttgcactactggacgctgaaacgagcagtgcaatatt 60
Query: 64 aaaagggcattggctg 79
||||||||||||||||
Sbjct: 61 aaaagggcattggctg 76
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 60.0 bits (30), Expect = 5e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 4 tgttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatatt 63
||||||| |||||||||||||||||| |||||| || | | ||||||||||||| ||
Sbjct: 1 tgttgtctggagccctttttctgttgtgctactgtgaaatcaggtgagcagtgcaatttt 60
Query: 64 aaaagggcat 73
||||||||||
Sbjct: 61 aaaagggcat 70
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 63/75 (84%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 7 tgtccagagccctttttctgttgtactactggcaattatg----atgagcagtgcaatat 62
||||||| ||||||||| |||||||||||||| || ||| | ||||||||||| |
Sbjct: 3 tgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaatgt 62
Query: 63 taaaagggcattggc 77
|||||||||||||||
Sbjct: 63 taaaagggcattggc 77
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggc 6
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggc 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 tgtccagagccctttttctgttgtactact 36
||||||| ||||||||| ||||||||||||
Sbjct: 2 tgtccagcgccctttttatgttgtactact 31
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattggc 77
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gcagtgcaatattaaaagggcattggc 77
|||||||||| ||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 agcagtgcaatattaaaagggcattgg 76
||||||||||| |||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattgg 76
