miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 178 bits (90), Expect = 9e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 7 attcactctagtgttttatggctttttattcctatgtgatagtaataaagtctcatgtag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcactctagtgttttatggctttttattcctatgtgatagtaataaagtctcatgtag 60
Query: 67 ggatggaagccatgaaatacattgtgaaaa 96
||||||||||||||||||||||||||||||
Sbjct: 61 ggatggaagccatgaaatacattgtgaaaa 90
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 21 tttatggctttttattcctatgtgatagtaataaagtctcatgtagggatggaagccatg 80
|||||||||||||||||||||||||| || | | ||||||||||||| |||||||||
Sbjct: 15 tttatggctttttattcctatgtgattgtgacatgatctcatgtagggagagaagccatg 74
Query: 81 aaataca 87
|||||||
Sbjct: 75 aaataca 81
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 17 gtgttttatggctttttattcctatgtgatagtaataaagtctcatgtagggat 70
|||| |||||||||||||||||||||||| || | ||| |||||||||||||
Sbjct: 11 gtgtcttatggctttttattcctatgtgaaggtgaacaaggctcatgtagggat 64
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gtgttttatggctttttattcctatgtgat 46
||||||||||||||| ||||||||||||||
Sbjct: 11 gtgttttatggctttctattcctatgtgat 40
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 gtgttttatggctttttattcctatgtgat 46
|||| |||||||||||||||||||||||||
Sbjct: 11 gtgtattatggctttttattcctatgtgat 40
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ttatggctttttattcctatgtgat 46
|||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgat 46
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tttatggctttttattcctatgtgat 46
||||||||||| ||||||||||||||
Sbjct: 15 tttatggctttctattcctatgtgat 40
>RF00246;mir-135;AANH01002735.1/65484-65395 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgatagtaataaagtctcatgtagggatggaagccatg 80
||||||||||||||||||| ||| ||| | | | |||| |||||||||||||||||
Sbjct: 17 tatggctttttattcctatctgactgtactgatggttcatatagggatggaagccatg 74
>RF00246;mir-135;BAAE01235973.1/746-658 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 gtgttttatggctttttattcctatgtgat 46
|||| ||||||||||||||||||| |||||
Sbjct: 11 gtgtcttatggctttttattcctacgtgat 40
>RF00246;mir-135;BAAE01233743.1/1592-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 23 tatggctttttattcctatgtgatagtaataaagtctcatgtagggatggaagccatg 80
||||||||||||||||||| ||| | | ||| | |||| |||||||||||||||||
Sbjct: 16 tatggctttttattcctatctgactgaactaatggttcatatagggatggaagccatg 73
>RF00246;mir-135;BAAF04004921.1/4146-4237 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 gtgttttatggctttttattcctatgtgat 46
|||| |||||||||| ||||||||||||||
Sbjct: 11 gtgtcttatggctttctattcctatgtgat 40
