miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 178 bits (90), Expect = 9e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ccctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtag 61
Query: 61 ggcgaaaagccatgggctactcaggggagg 90
||||||||||||||||||||||||||||||
Sbjct: 62 ggcgaaaagccatgggctactcaggggagg 91
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 107 bits (54), Expect = 3e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
|||||||| || ||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 4 ctctgctgcggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 63
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 64 ctaaaagccatgggctac 81
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 91.7 bits (46), Expect = 2e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 4 ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 63
Query: 63 cgaaaagccatgggctac 80
| |||||||||||||||
Sbjct: 64 ctgaaagccatgggctac 81
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 83.8 bits (42), Expect = 4e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||
Sbjct: 4 ctctgctgtggcctatggcttttcattcctatgtgattgccgtt-ggaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gctgtggtctatggctttttattcctatgtgat 39
|||||| ||||||||||||||||||||||||||
Sbjct: 8 gctgtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tgtggtctatggctttttattcctatgtgat 39
|||| ||||||||||||||||||||||||||
Sbjct: 10 tgtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgattg 41
||||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgattg 42
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ctatggctttttattcctatgtgat 39
|||||||||||||||||||||||||
Sbjct: 16 ctatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 5 ctgctgtggtctatggctttttattcctatgtgatt 40
|||||||| | ||||||||| |||||||||||||||
Sbjct: 6 ctgctgtgttttatggctttctattcctatgtgatt 41
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAIY01659495.1/471-383 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||| ||||||||||||||
Sbjct: 15 tctatggcttttcattcctatgtgatt 41
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtga 39
