miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;AADN02001197.1/36532-36457 9031:Gallus gallus
(chicken)
Length = 76
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 14 cgtgcagcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaa 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgcagcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaa 60
Query: 74 caccagggtggcactg 89
||||||||||||||||
Sbjct: 61 caccagggtggcactg 76
>RF00671;mir-138;AAFR03015360.1/50251-50176 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 109 bits (55), Expect = 7e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 79
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccgtcgccagtctgagaacggctacttcacaacaccag 66
Query: 80 ggt 82
|||
Sbjct: 67 ggt 69
>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
(house mouse)
Length = 76
Score = 89.7 bits (45), Expect = 6e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 80
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 67
Query: 81 g 81
|
Sbjct: 68 g 68
>RF00671;mir-138;AAKN02012252.1/96136-96211 10141:Cavia porcellus
(domestic guinea pig)
Length = 76
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 79
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccgttgcccatcagagaacggctacttcacaacaccag 66
Query: 80 ggt 82
|||
Sbjct: 67 ggt 69
>RF00671;mir-138;AAGV020455273.1/411-336 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 79
||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccggcgcccatcggaaaacggctacttcacaacaccag 66
Query: 80 gg 81
||
Sbjct: 67 gg 68
>RF00671;mir-138;AAWZ01011543.1/110956-110881 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 79.8 bits (40), Expect = 6e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 19 agcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacacca 78
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 6 agcagctggtgttgtgaatcaggccgttgccaaagagagaacggctacttcacaacacca 65
Query: 79 gggt 82
||||
Sbjct: 66 gggt 69
>RF00671;mir-138;ABGA01071061.1/4521-4596 9601:Pongo abelii
(Sumatran orangutan)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttca 70
|||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccgttgccaatcaaagaacggctacttca 57
>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccgtcaccagtcgga-gaacggctacttcacaacaccag 79
|||||||||||||||||||||||| || || || | ||||||||||||| |||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgcca-caatcaaaggaacggctacttcccaacaccag 66
Query: 80 ggt 82
|||
Sbjct: 67 ggt 69
>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccgtcaccagtc-ggagaacggctacttcacaacaccag 79
|||||||||||||||||||||||| || ||||| | || |||||||||| |||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccgcca-cagtcaagggaccggctacttcccaacaccag 66
Query: 80 ggt 82
|||
Sbjct: 67 ggt 69
>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 2 gtgctgcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 2 gtgctgcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
(zebrafish)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 2 gtgctgcagctggtgttgtgaatcaggccg 31
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 cggctacttcacaacaccagggtggca 86
|||||| ||||||||||||||||||||
Sbjct: 54 cggctatttcacaacaccagggtggca 80
>RF00671;mir-138;AAVX01140452.1/499-418 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 2 gtgctgcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 2 gtgctgcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
(tammar wallaby)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
(chicken)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
nigroviridis
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BAAF04008633.1/8370-8452 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 cggctacttcacaacaccagggtggcac 87
|||||| |||||||||||||||||||||
Sbjct: 54 cggctatttcacaacaccagggtggcac 81
>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
(zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccg 44
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01000937.1/11718-11794 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccg 44
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAGU02478942.1/4-74 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 55 gagaacggctacttcacaacaccagggtggcact 88
||||||||||||||||| |||||||||| |||||
Sbjct: 38 gagaacggctacttcac-acaccagggtcgcact 70
