miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00671;mir-138;AADN02051568.1/806-888 9031:Gallus gallus
(chicken)
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gttgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctat 60
Query: 61 ttcactacaccagggttgcatca 83
|||||||||||||||||||||||
Sbjct: 61 ttcactacaccagggttgcatca 83
>RF00671;mir-138;ABRO01071929.1/3084-3003 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 82
Score = 97.6 bits (49), Expect = 2e-20
Identities = 74/81 (91%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 tgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctattt 62
||||||||||||||||||||||||||||||| || ||||| |||| || ||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccgacagc-agcgcatcctcttacccggctattt 61
Query: 63 cactacaccagggttgcatca 83
||| |||||||||||||||||
Sbjct: 62 cacgacaccagggttgcatca 82
>RF00671;mir-138;ABQO010575943.1/598-680 9315:Macropus eugenii
(tammar wallaby)
Length = 83
Score = 93.7 bits (47), Expect = 3e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 gttgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctat 60
||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacaagcagctcatcctattacccggctat 60
Query: 61 ttcactacaccagggttgcatca 83
||||| |||||||||||||||||
Sbjct: 61 ttcaccacaccagggttgcatca 83
>RF00671;mir-138;ABRQ01008257.1/506-426 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 gttgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctat 60
|||||||||||||||||||||||||||||||||| ||||| |||| || |||||||
Sbjct: 1 gttgctgcagctggtgttgtgaatcaggccgacgagcagcgcatcctctta--cggctat 58
Query: 61 ttcactacaccagggttgcatca 83
||||| |||||||||||||||||
Sbjct: 59 ttcacgacaccagggttgcatca 81
>RF00671;mir-138;AAPY01619641.1/874-793 37347:Tupaia belangeri
(northern tree shrew)
Length = 82
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 tgctgcagctggtgttgtgaatcaggccgacg 34
||||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccgacg 34
>RF00671;mir-138;BAAF04008633.1/8370-8452 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 6 tgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctatttcac 65
||||||||||||||||||||||||||| | || | | ||||| | |||||||||||||
Sbjct: 6 tgcagctggtgttgtgaatcaggccgatgacacacacctcctaaaagccggctatttcac 65
Query: 66 tacaccagggt 76
||||||||||
Sbjct: 66 aacaccagggt 76
>RF00671;mir-138;BX908772.11/124956-125038 7955:Danio rerio
(zebrafish)
Length = 83
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 tgctgcagctggtgttgtgaatcaggccga 32
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
>RF00671;mir-138;AAVX01140452.1/499-418 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 60.0 bits (30), Expect = 5e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 3 tgctgcagctggtgttgtgaatcaggccgacggcaagcgcttcctactatccggctattt 62
||||||||||||||||||||||||||||| | |||| | |||| ||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccggc-aaaagcagctgctacgatccggctattt 61
Query: 63 cactacaccagggt 76
||| ||||||||||
Sbjct: 62 cacaacaccagggt 75
>RF00671;mir-138;AAVX01130926.1/1014-940 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tgctgcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAFR03015360.1/50251-50176 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAGV020455273.1/411-336 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;ABGA01071061.1/4521-4596 9601:Pongo abelii
(Sumatran orangutan)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAKN02012252.1/96136-96211 10141:Cavia porcellus
(domestic guinea pig)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AAWZ01011543.1/110956-110881 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AADN02001197.1/36532-36457 9031:Gallus gallus
(chicken)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAE01014577.1/2727918-2727843 99883:Tetraodon
nigroviridis
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gcagctggtgttgtgaatcaggccg 31
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AC124778.4/108490-108415 10090:Mus musculus
(house mouse)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cagctggtgttgtgaatcaggccg 31
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;CAAK05039157.1/16818-16742 7955:Danio rerio
(zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cagctggtgttgtgaatcaggccg 31
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01000937.1/11718-11794 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cagctggtgttgtgaatcaggccg 31
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;AANH01002440.1/5358-5433 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cagctggtgttgtgaatcaggccg 31
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
>RF00671;mir-138;BAAE01294625.1/198-123 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cagctggtgttgtgaatcaggccg 31
||||||||||||||||||||||||
Sbjct: 8 cagctggtgttgtgaatcaggccg 31
