miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 69
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 70 ttcctactttatggatgagtgtactgtg 97
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 149 bits (75), Expect = 7e-36
Identities = 85/87 (97%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 11 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 69
Query: 62 tcctactttatggatgagtgtactgtg 88
|||||||||||||||||||||||||||
Sbjct: 70 tcctactttatggatgagtgtactgtg 96
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 131 bits (66), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 10 gacagtgcagtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgt 68
Query: 61 ttcctactttatggatga 78
||||||||||||||||||
Sbjct: 69 ttcctactttatggatga 86
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 11 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 70
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
|||||||||||| |||||||||||||||||||||||||| | || ||||||||||
Sbjct: 11 acagtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtt 70
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 71 tcctactttatggatgagtgtactgt 96
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 10 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 69
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 70 tatggatgagt 80
|||||||||||
Sbjct: 79 tatggatgagt 89
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 81.8 bits (41), Expect = 1e-15
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagg-gtgtagtg 59
||||||| | ||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 10 gacagtggactcatccataaagtagaaagcactactaaacgcctgtgcccaagtgtagtg 69
Query: 60 tttcctactttatggatgagtgtactgtg 88
|||||||||||||||||||||||||||||
Sbjct: 70 tttcctactttatggatgagtgtactgtg 98
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 81.8 bits (41), Expect = 1e-15
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
||||||||||||| |||||||||||||||||||||||| || | || |||||||||
Sbjct: 10 gacagtgcagtcatccataaagtagaaagcactactaaccatccaatca--gtgtagtgt 67
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||| ||||| ||||||
Sbjct: 68 ttcctactttatggacgagtgcactgtg 95
