miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 3 cgccgccctgggctggatatcatcatatactgtaagttcactatgagacactacagtata 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccgccctgggctggatatcatcatatactgtaagttcactatgagacactacagtata 60
Query: 63 gatgatgtactcccctgggctgc 85
|||||||||||||||||||||||
Sbjct: 61 gatgatgtactcccctgggctgc 83
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 99.6 bits (50), Expect = 5e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 12 gggctggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgta 71
|||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10 gggcaggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgta 69
Query: 72 ctcccc 77
||||||
Sbjct: 70 ctcccc 75
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 89.7 bits (45), Expect = 5e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 ctgggctggatatcatcatatactgtaagttcacta-tgagacactacagtatagatgat 68
|||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||
Sbjct: 8 ctgggctggatatcatcatatattgtaagttcacaattcagacactacagtatagatgat 67
Query: 69 gtact 73
|||||
Sbjct: 68 gtact 72
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 7 gccctgggctggatatcatcatatactgtaagttcactatgagacactacagtatagatg 66
||||||| | |||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct: 5 gccctggccaggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatg 64
Query: 67 atgtact 73
|||||||
Sbjct: 65 atgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 83.8 bits (42), Expect = 3e-16
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactat-gagacactacagtatagatgatgtact 73
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtact 72
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 7 gccctgggctggatatcatcatatactgtaagttcactat-gagacactacagtatagat 65
||||||| | |||||||||| ||||||||||||| | || |||||||||||||||||||
Sbjct: 5 gccctggacaggatatcatcttatactgtaagtttaataaagagacactacagtatagat 64
Query: 66 gatgtact 73
||||||||
Sbjct: 65 gatgtact 72
