miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 4 ctggctgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgcccta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggctgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgcccta 60
Query: 64 tggattcagttctgcagttgggcagcaaata 94
|||||||||||||||||||||||||||||||
Sbjct: 61 tggattcagttctgcagttgggcagcaaata 91
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 127 bits (64), Expect = 3e-29
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 ctggctgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgcccta 63
|||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct: 1 ctggctgcttggctctgagaactgaattccataggcgttgaagcctcc-aaaatgcccta 59
Query: 64 tggattcagttctgcagttgggcagcaa 91
||||||||||||||||| ||||||||||
Sbjct: 60 tggattcagttctgcagctgggcagcaa 87
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tgcttggctttgagaactgaattccataggc 39
||||||||| |||||||||||||||||||||
Sbjct: 7 tgcttggctctgagaactgaattccataggc 37
>RF00691;mir-146;CAAK05045699.1/2034-2122 7955:Danio rerio
(zebrafish)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 cttggctttgagaactgaattcca 34
||||||||||||||||||||||||
Sbjct: 8 cttggctttgagaactgaattcca 31
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
