miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 264 bits (133), Expect = 3e-70
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 12 tcaccgtcttgctcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccac 71
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaccgtcttgctcggattcgcttggtgcaggtcgggaaccaattgtctgacacatccac 60
Query: 72 gaagttttacttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcg 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagttttacttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcg 120
Query: 132 gagtcctgatggtgaaa 148
|||||||||||||||||
Sbjct: 121 gagtcctgatggtgaaa 137
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 121 bits (61), Expect = 3e-27
Identities = 111/125 (88%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 12 tcaccgtcttgctcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccac 71
|||||||| |||||||||||| ||||||||||||||||| |||| ||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccac 60
Query: 72 ga-agttttactt-gctggtttgtgagcagggattggatcccgccttgcatcaaatgaat 129
| |||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 gtgagttttcctttgttggtttgtgagcagggattggatcccgccttgcatcaactgaat 120
Query: 130 cggag 134
|||||
Sbjct: 121 cggag 125
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 115 bits (58), Expect = 2e-25
Identities = 112/126 (88%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 12 tcaccgtcttgctcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccac 71
|||||||| |||||||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccac 60
Query: 72 ga-agttttac-ttgctggtttgtgagc-agggattggatcccgccttgcatcaaatgaa 128
| | || ||| ||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 61 gtgacttgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactgaa 120
Query: 129 tcggag 134
||||||
Sbjct: 121 tcggag 126
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 93.7 bits (47), Expect = 7e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 86 tggtttgtgagcagggattggatcccgccttgcatcaaatgaatcggagtcctgatggtg 145
|||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||
Sbjct: 77 tggtttgtgagcagtgattggatcccgccttgcatcaactgaatcggagccccgatggtg 136
Query: 146 aaa 148
|||
Sbjct: 137 aaa 139
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 89.7 bits (45), Expect = 1e-17
Identities = 102/118 (86%), Gaps = 6/118 (5%)
Strand = Plus / Plus
Query: 22 gctcggattcgcctggtgcaggtcgggaaccaatt-gtctgacacatccacga-agtttt 79
|||||||||||| |||||||||||||||||||||| | |||||||| || || | ||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttt 70
Query: 80 ac----ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 133
| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 71 aaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 128
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 79.8 bits (40), Expect = 1e-14
Identities = 106/124 (85%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 12 tcaccgtcttgctcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccac 71
|||||||| |||||||||||| ||||||||||||||| | ||| |||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaatccgctgacacagccac 59
Query: 72 gaag-ttttacttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatc 130
| |||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct: 60 gtgtcttttacttattggtt-gtgagcagggattggctcccgccttgcatcaactgaatc 118
Query: 131 ggag 134
||||
Sbjct: 119 ggag 122
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 73.8 bits (37), Expect = 6e-13
Identities = 94/112 (83%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 24 tcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccac--gaagttttac 81
|||||||||| ||||||||||||||||| ||||| |||||||| |||| || | | |
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaattggctgacacagccacgtgacttaatcc 72
Query: 82 ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 133
| ||| |||||| |||| |||||||||||||||||||||| |||||||||
Sbjct: 73 tcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 22 gctcggattcgcctggtgcaggtcgggaaccaatt 56
|||||||||||| ||||||||||||||||||||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaaccaatt 45
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 100 ggattggatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||||||||| ||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactgaatcggag 123
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 22 gctcggattcgcctggtgcaggtcgggaaccaattgtctgacacatccacg 72
|||||||||||| ||||||||||||||||| |||| |||||||| |||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaactgattggctgacacagccacg 61
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 102 attggatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||||||| ||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 102 attggatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||||||| ||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 102 attggatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||||||| ||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 102 attggatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||||||| ||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 28 attcgcctggtgcaggtcgggaacca 53
|||||| |||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 12 tcaccgtcttgctcggattcgcctggtgcaggtcgggaac 51
|||||||| |||||||||||| |||||||||||||||||
Sbjct: 1 tcaccgtcgagctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 23 ctcggattcgcctggtgcaggtcgggaaccaattgtctgacac 65
||||||||||| ||||||||||||||||| |||| |||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacac 54
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 ggatcccgccttgcatcaaatgaatcggag 134
||||||||||||||||||| ||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggag 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 ctcggattcgcctggtgcaggtcgggaac 51
||||||||||| |||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 102 attggatcccgccttgcatcaaatgaatcg 131
|||||||||||||||||||||| |||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 90 ttgtgagcagggattggatcccgccttgcatcaaatgaatc 130
|||||||||||||| |||||| ||||| |||||| ||||||
Sbjct: 26 ttgtgagcagggatcggatcctgccttccatcaactgaatc 66
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 gatcccgccttgcatcaaatgaatcggag 134
|||||||||||||||||| ||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 24 tcggattcgcctggtgcaggtcgggaac 51
|||||||||| |||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 gccttgcatcaaatgaatcggagtcc 137
|||||||||||| |||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggagtcc 117
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 gattcgcctggtgcaggtcgggaacca 53
||||||| |||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 ggatcccgccttgcatcaaatgaatcggag 134
||||||||||||||| ||| ||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggag 90
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 ggatcccgccttgcatcaaatgaatcggag 134
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
