miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
           pekinensis
          Length = 97

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 130 ttgggaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||||||
Sbjct: 64  ttgggaatcttgatgatgctgcatca 89




>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
           cress)
          Length = 125

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 131 tgggaatcttgatgatgctgcatca 155
           |||||||||||||||||||||||||
Sbjct: 93  tgggaatcttgatgatgctgcatca 117




>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
          Length = 135

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 131 tgggaatcttgatgatgctgcatca 155
           |||||||||||||||||||||||||
Sbjct: 103 tgggaatcttgatgatgctgcatca 127




>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
           (papaya)
          Length = 131

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 131 tgggaatcttgatgatgctgcatc 154
           ||||||||||||||||||||||||
Sbjct: 99  tgggaatcttgatgatgctgcatc 122




>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
          Length = 134

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 131 tgggaatcttgatgatgctgcatc 154
           ||||||||||||||||||||||||
Sbjct: 102 tgggaatcttgatgatgctgcatc 125




>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
          Length = 183

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 131 tgggaatcttgatgatgctgcatc 154
           ||||||||||||||||||||||||
Sbjct: 151 tgggaatcttgatgatgctgcatc 174




>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
          Length = 111

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 134 gaatcttgatgatgctgcatcatctaac 161
           |||||||||||||||||||||| |||||
Sbjct: 30  gaatcttgatgatgctgcatcagctaac 3




>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
           Group
          Length = 238

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 131 tgggaatcttgatgatgctgcatc 154
           ||||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgcatc 229




>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
          (papaya)
          Length = 201

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 13 tgtttgaggatgcaacatcatcaagattcacaaaa 47
          |||||| ||||| | ||||||||||||||||||||
Sbjct: 2  tgtttgcggatggagcatcatcaagattcacaaaa 36



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 131 tgggaatcttgatgatgctgca 152
           ||||||||||||||||||||||
Sbjct: 169 tgggaatcttgatgatgctgca 190




>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
           trichocarpa
          Length = 144

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 130 ttgggaatcttgatgatgctgca 152
           |||||||||||||||||||||||
Sbjct: 111 ttgggaatcttgatgatgctgca 133




>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
          Length = 132

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 130 ttgggaatcttgatgatgctgca 152
           |||||||||||||||||||||||
Sbjct: 105 ttgggaatcttgatgatgctgca 127




>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
          Length = 155

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 131 tgggaatcttgatgatgctgcat 153
           |||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgcat 145




>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
          Length = 153

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 131 tgggaatcttgatgatgctgcat 153
           |||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgcat 143




>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
           (sorghum)
          Length = 190

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 131 tgggaatcttgatgatgctgcat 153
           |||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgcat 180




>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
           pekinensis
          Length = 115

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 86  gaatcttgatgatgctgcatca 107




>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
           cress)
          Length = 109

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 80  gaatcttgatgatgctgcatca 101




>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
           trichocarpa
          Length = 130

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 101 gaatcttgatgatgctgcatca 122




>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
           trichocarpa
          Length = 129

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 100 gaatcttgatgatgctgcatca 121




>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
           (castor bean)
          Length = 156

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 131 tgggaatcttgatgatgctgca 152
           ||||||||||||||||||||||
Sbjct: 124 tgggaatcttgatgatgctgca 145




>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
           (castor bean)
          Length = 143

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 114 gaatcttgatgatgctgcatca 135




>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
           (castor bean)
          Length = 159

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 130 gaatcttgatgatgctgcatca 151




>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
           (castor bean)
          Length = 160

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 131 gaatcttgatgatgctgcatca 152




>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
          Length = 90

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 61  gaatcttgatgatgctgcatca 82




>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
          Length = 168

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 139 gaatcttgatgatgctgcatca 160




>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
          Length = 140

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 131 tgggaatcttgatgatgctgca 152
           ||||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgca 129




>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
          Length = 148

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 119 gaatcttgatgatgctgcatca 140




>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
           (sorghum)
          Length = 139

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 110 gaatcttgatgatgctgcatca 131




>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
           (sorghum)
          Length = 122

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 93  gaatcttgatgatgctgcatca 114




>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 134 gaatcttgatgatgctgcatca 155
           ||||||||||||||||||||||
Sbjct: 83  gaatcttgatgatgctgcatca 104