miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 153 bits (77), Expect = 5e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 5 ctaggaagaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 60
Query: 65 ctatacaacctgctgcctttcttag 89
|||||||||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 109 bits (55), Expect = 6e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 11 agaggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactatac 70
||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||
Sbjct: 7 agaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactatac 66
Query: 71 aacctgctgcctttc 85
|||||||||||||||
Sbjct: 67 aacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 65.9 bits (33), Expect = 8e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 13 aggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactatacaa 72
|||| |||||||||||||||||||||||| | ||||| || |||||||| ||||| |
Sbjct: 9 aggttgtaggttgcatagttttagggcagcggttttgtccactaggaggtacctatatga 68
Query: 73 cctgctgcctttc 85
|||||||||||||
Sbjct: 69 cctgctgcctttc 81
>RF00027;let-7;AANU01121567.1/12811-12727 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 13 aggtagtaggttgcatagttttagggcagggattttgctcagaaggaggtaactatacaa 72
|||||||||||||| |||||| ||| |||||||||| || |||||||||| |||| |
Sbjct: 9 aggtagtaggttgcctagtttgaggacagggattttatccacaaggaggtaattatatga 68
Query: 73 cctgctgcc 81
|||||||||
Sbjct: 69 cctgctgcc 77
>RF00027;let-7;AAGW01052945.1/1566-1484 9986:Oryctolagus cuniculus
(rabbit)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 35 agggcagggattttgctcagaaggaggtaactatacaacctgctgcctttctt 87
||||||| ||||||||||| ||| |||||||| ||| |||||| |||||||||
Sbjct: 29 agggcagagattttgctcacaagaaggtaactctacgacctgcagcctttctt 81
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 62 taactatacaacctgctgcctttcttag 89
||||||||||||||||||||||||||||
Sbjct: 56 taactatacaacctgctgcctttcttag 83
>RF00027;let-7;ABGA01101244.1/3837-3924 9601:Pongo abelii
(Sumatran orangutan)
Length = 88
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 13 aggtagtaggttgcatagttttagggcagggatttt 48
||||||||||||||||||||| ||| ||||||||||
Sbjct: 9 aggtagtaggttgcatagtttgaggacagggatttt 44
>RF00027;let-7;AL162595.17/20369-20285 9606:Homo sapiens (human)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 5 ctaggaagaggtagtaggttgcatagttttagggcagggatttt 48
||||||||||| | |||||||||||||| |||||||| |||||
Sbjct: 1 ctaggaagaggcaacaggttgcatagtttgagggcaggcatttt 44
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gaggtagtaggttgcatagttttaggg 38
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
