miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 gacatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgt 68
Query: 61 atttcaggt 69
|||||||||
Sbjct: 69 atttcaggt 77
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
Query: 62 tttcagg 68
|||||||
Sbjct: 70 tttcagg 76
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 gacatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgt 60
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 9 gacatacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtatgt 68
Query: 61 atttcagg 68
|| |||||
Sbjct: 69 atctcagg 76
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 79.8 bits (40), Expect = 4e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 gacatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgt 60
|||||||||||||||||||||||||| | || | | ||||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatggagctcgga-gctatggaatgtaaagaagtatgt 67
Query: 61 atttcagg 68
|| |||||
Sbjct: 68 atctcagg 75
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 gacatacttctttatatgcccatatgaac-ctggcaagctatggaatgtaaagaagtatg 59
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatgaacacgagcaa-ctatggaatgtaaagaagtatg 67
Query: 60 tat 62
|||
Sbjct: 68 tat 70
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 77.8 bits (39), Expect = 2e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||||| ||||||||||| | || |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatacccatatgaacttaaca-gctatggaatgtaaagaagtatgta 68
Query: 62 ttt 64
|||
Sbjct: 69 ttt 71
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||| | ||||||||||| | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||| | ||||||||||| | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69
Query: 62 ttt 64
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 69.9 bits (35), Expect = 4e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||| | ||||||||||| | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 62 ttt 64
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||| | ||||||||||| | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacataa-atgctatggaatgtaaagaagtatgta 68
Query: 62 ttt 64
|||
Sbjct: 69 ttt 71
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctg-gcaagctatggaatgtaaagaagtatgt 60
|||||||||||||| | |||||||||| | | ||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69
Query: 61 att 63
|||
Sbjct: 70 att 72
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 3 catacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgtat 62
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaaa-tgctttgctatggaatgtaaagaagtatgtat 69
Query: 63 tt 64
||
Sbjct: 70 tt 71
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 gacatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgt 60
|||||||||||||||| ||||||||| || || |||||||||||||||||||||||
Sbjct: 9 gacatacttctttatacgcccatatggacttgctgcactatggaatgtaaagaagtatgt 68
Query: 61 a 61
|
Sbjct: 69 a 69
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatgaacctggcaagctatggaatgtaaagaagtatgta 61
|||||||||||||| | |||||||||| | | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagtatgta 69
Query: 62 ttt 64
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 ctatggaatgtaaagaagtatgtatt 63
||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 ctatggaatgtaaagaagtatgtatt 63
||||||||||||||||||||||||||
Sbjct: 47 ctatggaatgtaaagaagtatgtatt 72
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgtat 62
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatgta 61
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccata 24
|||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 ctatggaatgtaaagaagtatg 59
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 ctatggaatgtaaagaagtatg 59
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatg 26
||||||||||| |||||||||||||
Sbjct: 11 acatacttcttcatatgcccatatg 35
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 acatacttctttatatgcccatatg 26
||||||||||| |||||||||||||
Sbjct: 10 acatacttcttcatatgcccatatg 34
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatg 88
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tatggaatgtaaagaagtatg 59
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
