miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
guttata
Length = 86
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 cgaagtgctgtagcagcacatcatggtttgcatgctctgctcagggtgcaaatcatgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cgaagtgctgtagcagcacatcatggtttgcatgctctgctcagggtgcaaatcatgatt 64
Query: 61 tgctgctgtag 71
|||||||||||
Sbjct: 65 tgctgctgtag 75
>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgctgtagcagcacatcatggtttgca 32
|||||||||||||||||||||||||||
Sbjct: 10 tgctgtagcagcacatcatggtttgca 36
>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacatcatggtttgcatgct 36
||||||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgcatgct 40
>RF00455;mir-15;AAPN01094471.1/3183-3268 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tgctgtagcagcacatcatggtttgcatg 34
|||| ||||||||||||||||||||||||
Sbjct: 10 tgctatagcagcacatcatggtttgcatg 38
>RF00455;mir-15;AAYZ01325292.1/263-348 9978:Ochotona princeps
(American pika)
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 aagtgctgtagcagcacatcatggttt 29
|||| ||||||||||||||||||||||
Sbjct: 7 aagtactgtagcagcacatcatggttt 33
>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ctgtagcagcacatcatggtttg 30
|||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggtttg 34
>RF00455;mir-15;AADN02013299.1/17575-17492 9031:Gallus gallus
(chicken)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgtagcagcacatcatggtttg 30
||||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggtttg 34
>RF00455;mir-15;AAVX01142701.1/355-269 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgtagcagcacatcatggtttg 30
||||||||||||||||||||||
Sbjct: 13 tgtagcagcacatcatggtttg 34
>RF00455;mir-15;BAAF04019869.1/1029-1115 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgctgtagcagcacatcatggtttg 30
|||||||||||| ||||||||||||
Sbjct: 10 tgctgtagcagcgcatcatggtttg 34
