miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 2 gtcatactttagcagcacgtaaatattggtgttaagactgtaaatatctccagtattaac 61
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtcatactctagcagcacgtaaatattggtgttaaaactgtaaatatctccagtattaac 60
Query: 62 tgtgctgctgaagtaaggc 80
|||||||||||||||||||
Sbjct: 61 tgtgctgctgaagtaaggc 79
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 10 ttagcagcacgtaaatattggtgttaagactgtaaa--tatctccagtattaactgtgct 67
||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||
Sbjct: 9 ttagcagcacgtaaatattggagttaagattctaaaattatctccagtattaactgtgct 68
Query: 68 gctgaagtaagg 79
||||||||||||
Sbjct: 69 gctgaagtaagg 80
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 81.8 bits (41), Expect = 1e-15
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgttaagactgtaaat-atctccagtattaactgtgc 66
||||||||||||||||||||||||||||| | | ||| | |||||||||||| |||||||
Sbjct: 7 ctttagcagcacgtaaatattggtgttaa-attctaagttatctccagtattgactgtgc 65
Query: 67 tgctgaagtaagg 79
|||||||||||||
Sbjct: 66 tgctgaagtaagg 78
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 tactttagcagcacgtaaatattggtgttaagact 40
|||| |||||||||||||||||||| |||||||||
Sbjct: 5 tactgtagcagcacgtaaatattggagttaagact 39
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgt 33
||||||||||||||||||||||||||
Sbjct: 7 ctttagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgt 33
||||||||||||||||||||||||||
Sbjct: 7 ctttagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 ctttagcagcacgtaaatattggtgtta 35
||||||||||||||||||||||| ||||
Sbjct: 7 ctttagcagcacgtaaatattggagtta 34
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggtgttaag 37
|||||||||||||||||||| ||||||
Sbjct: 10 tagcagcacgtaaatattggagttaag 36
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactttagcagcacgtaaatattggtgttaa 36
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactgtagcagcacgtaaatattggagttaa 35
