miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 369 bits (186), Expect = e-101
Identities = 195/198 (98%)
Strand = Plus / Plus
Query: 2 gttatgggagtggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgc 61
|||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct: 1 gttatgggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgc 60
Query: 62 tgacctatggattcctcagccctatctatttatgatttcaaacatatagataggtttgtg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgacctatggattcctcagccctatctatttatgatttcaaacatatagataggtttgtg 120
Query: 122 ggtttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagg 180
Query: 182 gagctctacattcatttc 199
||||||||||||||||||
Sbjct: 181 gagctctacattcatttc 198
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 63.9 bits (32), Expect = 8e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacct 67
|||||||||||||||||||||||| | | ||| || || || |||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 66
Query: 68 atggattcctcagccctatc 87
|||||| || ||||||||||
Sbjct: 67 atggatcccacagccctatc 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 tttggattgaagggagctctaca 191
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 58.0 bits (29), Expect = 5e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 125 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 184
|||||||| |||||||||||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 104 ttgcatatctcaggagctttatt--acctaatgttagatctttttttggattgaagggag 161
Query: 185 ctct 188
||||
Sbjct: 162 ctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 54.0 bits (27), Expect = 8e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacct 67
|||||||||||||||||||||||| | | |||| || || ||||||||||||| ||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 68 atggattcctcagccctat 86
|||||| || |||||||||
Sbjct: 67 atggatcccacagccctat 85
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 125 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 184
|||||||| |||||||||| ||| ||| | | || |||| || ||||||||||||||||
Sbjct: 120 ttgcatatctcaggagcttcatt--accttgtattagatccttgtttggattgaagggag 177
Query: 185 ctctacat 192
||||||||
Sbjct: 178 ctctacat 185
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 50 aaattgagctgctgacctatggattcctcagccctatctattt 92
||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 49 aaattgagctgctgatctatggatccctcaatcctatctattt 91
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 108 tagataggtttgtgggtttgcatatgtcaggagct 142
||||||||||||||| ||||||||| |||||||||
Sbjct: 104 tagataggtttgtgg-tttgcatatatcaggagct 137
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gggagtggagctccttgaagtccaa 31
|||||||||||||||||||||||||
Sbjct: 6 gggagtggagctccttgaagtccaa 30
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tttttggattgaagggagctcta 189
|||||||||||||||||||||||
Sbjct: 152 tttttggattgaagggagctcta 174
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 169 tttggattgaagggagctctacat 192
||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacat 195
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 tttggattgaagggagctctaca 191
|||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctaca 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 attgagctgctgacctatggattcctcagcccta 85
|||||||||| || ||||||||||| ||||||||
Sbjct: 51 attgagctgccgagctatggattccacagcccta 84
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 170 ttggattgaagggagctctaca 191
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
