miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AADN02013299.1/17205-17125 9031:Gallus gallus
(chicken)
Length = 81
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 2 gcagtgctctagcagcacgtaaatactggagtttgggattgcctgttgctctccagtatt 61
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1 gcagtgctctagcagcacgtaaatactggagtgggggatcgcctgttgctctccagtatt 60
Query: 62 gcattgctgct 72
|||||||||||
Sbjct: 61 gcattgctgct 71
>RF00254;mir-16;AAPN01018576.1/2935-3016 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 97.6 bits (49), Expect = 2e-20
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 gtgctctagcagcacgtaaatactggagtttgggattgcct-gttgctctccagtattgc 63
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 4 gtgccctagcagcacgtaaatactggagtttggggatgcctcgttgctctccagtattgc 63
Query: 64 attgctgct 72
|||||||||
Sbjct: 64 attgctgct 72
>RF00254;mir-16;AAWZ01041379.1/6076-6157 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 gctctagcagcacgtaaatactggagt 33
|||||||||||||||||||||||||||
Sbjct: 6 gctctagcagcacgtaaatactggagt 32
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 gcagtgctctagcagcacgtaaatactggagtt 34
|||||||| |||||||||||||||| |||||||
Sbjct: 1 gcagtgctttagcagcacgtaaatattggagtt 33
>RF00254;mir-16;AAVX01142701.1/173-96 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatactggagtt 34
||||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatactggagtt 33
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 gtgctctagcagcacgtaaatactggagtt 34
||||| |||||||||||||||| |||||||
Sbjct: 4 gtgctgtagcagcacgtaaatattggagtt 33
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 gcagtgctctagcagcacgtaaata 26
|||||||| ||||||||||||||||
Sbjct: 1 gcagtgctttagcagcacgtaaata 25
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 2 gcagtgctctagcagcacgtaaatactggagtt 34
||||||| |||||||||||||||| |||||||
Sbjct: 1 gcagtgccttagcagcacgtaaatattggagtt 33
