miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttgt 70
Query: 61 agcattatgttg 72
||||||||||||
Sbjct: 71 agcattatgttg 82
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttgt 60
||||||||||||||||||||||||||| | | | | | ||||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagtggtgtgt-gcatctactgcagtgaaggcacttgt 69
Query: 61 agcatt 66
|||||
Sbjct: 70 ggcatt 75
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 63.9 bits (32), Expect = 2e-10
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttgt 60
||||||||||||||||||||||||||| | | || || ||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagtg-tct-taaaatctactgcagtgaaggcacttca 68
Query: 61 agcattat 68
||||||||
Sbjct: 69 agcattat 76
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/58 (89%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 58
|||||||||||||||||||||||||| | ||| || ||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagt--tttatcaaatctactgcagtgaaggcactt 66
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 58
|||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagtactatgcaatacctactgcagtggaggcactt 68
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 60.0 bits (30), Expect = 4e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 58
|||||||||||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagttttcta-aaaatctactgcagtgaaggcactt 67
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttgt 60
|||||||||||||||||||||||||| ||| | | ||||||||||| |||||||| |
Sbjct: 11 gtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggcacttct 70
Query: 61 agca 64
||||
Sbjct: 71 agca 74
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 58
|||||||||||||||||||||||||| | ||| || ||||||||||| ||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagt--tcaatataatctactgcagtggaggcactt 66
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 54.0 bits (27), Expect = 2e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagtgatatataga-acctactgcagtgaaggcactt 58
|||||||||||||||||||||||||| | || || | ||||||||||||| ||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagt-acatttaaatacctactgcagtggaggcactt 68
>RF00051;mir-17;AAPN01282049.1/1442-1526 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 tagaacctactgcagtgaaggcacttgtagcatt 66
||||| || |||||||||||||||||||||||||
Sbjct: 45 tagaatctgctgcagtgaaggcacttgtagcatt 78
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gtcaaagtgcttacagtgcaggtagt 26
||||||||||||||||||||||||||
Sbjct: 11 gtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtagtgat 29
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtagtgat 29
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtagtga 28
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtga 38
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 caaagtgcttacagtgcaggtagt 26
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtagt 26
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtag 25
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtag 25
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 aaagtgcttacagtgcaggtag 25
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 3 caaagtgcttacagtgcaggtagtg 27
||||||||| |||||||||||||||
Sbjct: 13 caaagtgctcacagtgcaggtagtg 37
