miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 99.6 bits (50), Expect = 4e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1 ctgttagttttgcatagttgcactacaagaagagagtggttgtgcaaatctatgcaaagc 60
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
Sbjct: 3 ctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaac 62
Query: 61 tgatggtggc 70
||||||||||
Sbjct: 63 tgatggtggc 72
>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 99.6 bits (50), Expect = 4e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1 ctgttagttttgcatagttgcactacaagaagagagtggttgtgcaaatctatgcaaagc 60
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 3 ctgttagttttgcatagttgcactgcaagaagagatgcgttgtgcaaatctatgcaaagc 62
Query: 61 tgatggtggc 70
|||| |||||
Sbjct: 63 tgatagtggc 72
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 5 tagttttgcatagttgcactacaagaagagagtggttgtgcaaatctatgcaaagctgat 64
||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct: 7 tagttttgcatagttgcactacaagaatagatgagttgtgcaaatctatgcaaaactgat 66
Query: 65 ggtggc 70
||||||
Sbjct: 67 ggtggc 72
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 3 gttagttttgcatagttgcactacaagaagagagtggttgtgcaaatctatgcaaagctg 62
||||||||||| ||||||| || |||||||| | |||||||||||||||||||| |||
Sbjct: 5 gttagttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactg 64
Query: 63 atggtggc 70
| ||||||
Sbjct: 65 acggtggc 72
>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 13 catagttgcactacaagaagagagtggttgtgcaaatctatgcaaagctga 63
|||| |||||||||||||||| || || ||||||||||||||||| ||||
Sbjct: 15 cataattgcactacaagaagaatgtagt-gtgcaaatctatgcaaaactga 64
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 gttgtgcaaatctatgcaaagctga 63
|||||||||||||||||||| ||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56
