miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;CR390304.1/91-171 9031:Gallus gallus (chicken)
Length = 81
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 cttgtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cttgtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagc 62
Query: 61 acttaaagtactg 73
|||||||||||||
Sbjct: 63 acttaaagtactg 75
>RF00051;mir-17;ABRO01215612.1/2433-2512 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 85.7 bits (43), Expect = 7e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 tgtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcac 62
|||||||||||||||||||||||||| ||||||| || | ||||||||||||| |||||
Sbjct: 5 tgtagcactaaagtgcttatagtgca-gtagtgtccagttatctactgcattacgagcac 63
Query: 63 ttaaagtactg 73
|||||||||||
Sbjct: 64 ttaaagtactg 74
>RF00051;mir-17;AAPN01282049.1/1987-2067 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 cttgtagcactaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagc 60
|||||||||||||||||||||||||||||| | |||| | | ||||||||||||| |||
Sbjct: 3 cttgtagcactaaagtgcttatagtgcaggcaatgtttagtcgtctactgcattatgagc 62
Query: 61 acttaaagt 69
|||| ||||
Sbjct: 63 acttcaagt 71
>RF00051;mir-17;AANH01000396.1/151070-150987 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 65.9 bits (33), Expect = 6e-11
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 9 actaaagtgcttatagtgcaggtagtg---ttcactaatctactgcattataagcactta 65
||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgtttttctcctatctactgcaatataagcacttg 70
Query: 66 aagtact 72
|||||||
Sbjct: 71 aagtact 77
>RF00051;mir-17;CAAE01014581.1/3627532-3627453 99883:Tetraodon
nigroviridis
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 actaaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcacttaaag 68
||||||||||||||||||||||||||||| || |||||||||| | | ||||||| |||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgttttct-atctactgcaatgtgagcacttgaag 69
Query: 69 ta 70
||
Sbjct: 70 ta 71
>RF00051;mir-17;BAAF04006740.1/10036-9953 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 actaaagtgcttatagtgcaggtagtgtt 37
|||||||||||||||||||||||||||||
Sbjct: 11 actaaagtgcttatagtgcaggtagtgtt 39
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtagtgt 36
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtgt 38
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagt 34
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagt 34
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;ABPJ01018453.1/475-563 35575:Mchenga conophoros
Length = 89
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagt 34
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;BAAE01210639.1/1988-1907 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagt 34
||||||||||||||||||||||||
Sbjct: 13 taaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtag 35
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtagtgttcactaatctactgca 52
|||||||||| |||||||||||| |||| ||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagttttcagagatctactgca 54
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcactt 64
|||||||||| ||||||||||| ||||| |||||||||| | |||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagagttca-ggatctactgcagtttaagcactt 65
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagtg 35
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagtg 35
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtagtgttcactaatctactgca 52
|||||||||| |||||||||||| || | |||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagttttatcaaatctactgca 54
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 taaagtgcttatagtgcaggtagtg 35
||||||||||| |||||||||||||
Sbjct: 13 taaagtgcttacagtgcaggtagtg 37
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 aaagtgcttatagtgcaggtagtgt 36
|||||||||| ||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgt 38
