miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00658;mir-21;AADN02025785.1/47934-47863 9031:Gallus gallus
(chicken)
Length = 72
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 60
Query: 64 ggctgtctg 72
|||||||||
Sbjct: 61 ggctgtctg 69
>RF00658;mir-21;CAAB01003431.1/24512-24584 31033:Takifugu rubripes
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 9 gatagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggct 67
||||||||||||||||| ||||| ||||| || || |||||||||| ||||| ||| |||
Sbjct: 6 gatagcttatcagactggtgttggctgttaggttcccatggcaacagcagtctgtaagct 65
Query: 68 gtctg 72
|||||
Sbjct: 66 gtctg 70
>RF00658;mir-21;BAAF04044466.1/2035-1963 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggt 62
|||| ||||||||||||||||| ||||| ||||| ||| || ||| ||||||||| ||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 63 aggctgtctg 72
||||||||||
Sbjct: 61 aggctgtctg 70
>RF00658;mir-21;AAVX01193435.1/262-191 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 4 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 63
|||| ||||||||||||||||| ||||| ||||| | || |||| |||||||| ||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttagctcaggtggcgacaacagttggta 60
Query: 64 ggctgtctg 72
|||| ||||
Sbjct: 61 ggctatctg 69
