miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 133 bits (67), Expect = 5e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 12 agagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaa 71
|||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 agagctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaa 60
Query: 72 catattgtcatctttcctg 90
|||||||||||||||||||
Sbjct: 61 catattgtcatctttcctg 79
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 103 bits (52), Expect = 5e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 12 agagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaa 71
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct: 1 agagctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccga 60
Query: 72 catattgtcatctttc 87
||| ||||||||||||
Sbjct: 61 catgttgtcatctttc 76
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 12 agagctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaa 71
|||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
Query: 72 catattgtcatctttcctg 90
||||||| | |||||||||
Sbjct: 61 catattgccctctttcctg 79
>RF00661;mir-31;ABRQ01173586.1/2990-2912 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 16 ctggagaggaggcaagatgttggcatagctgttgatctaaaaacctgctatgccaacata 75
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 5 ctggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacata 64
Query: 76 ttgtcatctttc 87
||| ||||||||
Sbjct: 65 ttgccatctttc 76
>RF00661;mir-31;CAAE01014681.1/977367-977288 99883:Tetraodon
nigroviridis
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 ggagaggaggcaagatgttggcatagctg 46
||||||||||||||||| |||||||||||
Sbjct: 7 ggagaggaggcaagatgctggcatagctg 35
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctgttga 50
|||||||||||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgttga 25
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctgtt 48
||||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgtt 37
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gaggcaagatgttggcatagctg 46
|||||||||||||||||||||||
Sbjct: 13 gaggcaagatgttggcatagctg 35
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctgt 47
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgt 36
>RF00661;mir-31;CAAK05021429.1/259-339 7955:Danio rerio
(zebrafish)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctgtt 48
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgtt 37
>RF00661;mir-31;ABEP02037830.1/78220-78140 7739:Branchiostoma
floridae (Florida lancelet)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 ggcaagatgttggcatagctgtt 48
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgtt 37
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 aggcaagatgttggcatagctg 46
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
