miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 135 bits (68), Expect = 8e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcag 63
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 64 caagtatactgc 75
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 2 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagc 61
|||||||| |||||||||||||||||||||||||||| | | | || ||||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagc 63
Query: 62 aagtatactgc 72
|||||||||||
Sbjct: 64 aagtatactgc 74
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/72 (88%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 2 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagtca-aggaagcaatcag 60
|||||||| |||||||||||||||||||||||||| || ||||| | ||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgtgc---agtcagaaaaagcaatcag 61
Query: 61 caagtatactgc 72
||||||||||||
Sbjct: 62 caagtatactgc 73
