miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 28 cagcctggttgccaggcagtgtagttagctgattgcccaaagcaac 73
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcctggttgccaggcagtgtagttagctgattgcccaaagcaac 46
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 gcctggttgccaggcagtgtagttagctgattg 62
|||||||||||||||||||||||||||||||||
Sbjct: 3 gcctggttgccaggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 63.9 bits (32), Expect = 2e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 29 agcctggttgccaggcagtgtagttagctgattgcc 64
||||||||| ||||||||||||||||||||||||||
Sbjct: 1 agcctggttaccaggcagtgtagttagctgattgcc 36
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 ctggttgccaggcagtgtagttagctgattgc 63
|||||| | |||||||||||||||||||||||
Sbjct: 5 ctggttactaggcagtgtagttagctgattgc 36
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 ctggttgccaggcagtgtagttagctgattgc 63
|||||| | |||||||||||||||||||||||
Sbjct: 5 ctggttactaggcagtgtagttagctgattgc 36
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 aggcagtgtagttagctgattgc 63
|||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgc 36
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 aggcagtgtagttagctgattgc 63
|||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattgc 36
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 caggcagtgtagttagctgattg 62
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 caggcagtgtagttagctgattg 62
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 aggcagtgtagttagctgattg 62
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 aggcagtgtagttagctgattg 62
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 aggcagtgtagttagctgattg 62
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
