miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 63
Query: 61 actgccaccaaaacaag 77
|||||||||||||||||
Sbjct: 64 actgccaccaaaacaag 80
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 cttggtttgcaggcagtgtagttagctgattgtctgcagaattccacaatcactaacttc 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct: 4 cttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaattc 63
Query: 61 actgccaccaaaacaag 77
||||||| |||||||||
Sbjct: 64 actgccatcaaaacaag 80
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cttggtttgcaggcagtgtagttagctgattgt 33
||||||||| |||||||||||||||||||||||
Sbjct: 4 cttggtttgtaggcagtgtagttagctgattgt 36
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||||||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattgt 36
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 caatcactaacttcactgccaccaaaacaag 77
|||||||||||| |||||||| |||||||||
Sbjct: 50 caatcactaactccactgccatcaaaacaag 80
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattg 32
|||||| ||||||||||||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattg 35
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 caatcactaacttcactgccaccaaaacaag 77
|||||||||||| |||||||| |||||||||
Sbjct: 50 caatcactaactccactgccatcaaaacaag 80
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 50 acaatcactaactccactgccatcaaaacaag 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 46 acaatcactaacttcactgccaccaaaacaag 77
||||||||||||| |||||||| |||||||||
Sbjct: 49 acaatcactaactccactgccatcaaaacaag 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 ggtttgcaggcagtgtagttagctgattgt 33
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtaattagctgattgt 36
>RF00456;mir-34;AAWZ01034188.1/3307-3229 28377:Anolis carolinensis
(green anole)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;ABQF01045704.1/20460-20539 59729:Taeniopygia
guttata
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 13 caggcagtgtagttagctgattg 35
>RF00456;mir-34;AADN02058045.1/6075-5997 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 caggcagtgtagttagctgattg 32
|||||||||||||||||||||||
Sbjct: 12 caggcagtgtagttagctgattg 34
>RF00456;mir-34;AAPN01276489.1/4603-4524 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABVD01341709.1/1775-1696 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABRO01055556.1/2540-2461 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>RF00456;mir-34;ABRQ01219522.1/667-588 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aggcagtgtagttagctgattg 32
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
