miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 tttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataactg 65
Query: 61 aagaatggtg 70
||||||||||
Sbjct: 66 aagaatggtg 75
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 tttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataactg 60
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct: 6 tttttcggttatcatggtaccgatgctgtagctctgaaaggtacagtactgtgatagctg 65
Query: 61 aagaatgg 68
||||||||
Sbjct: 66 aagaatgg 73
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 aaaggtacagtactgtgataactgaagaatgg 68
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;BAAF04023117.1/37025-37099 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 2 ttttcggttatcatggtaccggtgctgtatacgtgaaaggtacagtactgtgataactga 61
||||| |||||||||||||||||||||| | | | | |||||||||| ||||||||||
Sbjct: 7 ttttcagttatcatggtaccggtgctgtgtgcctatcaagtacagtactatgataactga 66
Query: 62 aga 64
|||
Sbjct: 67 aga 69
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 38 aaggtacagtactgtgataactgaagaatgg 68
|||||||||||||||||||||||||| ||||
Sbjct: 43 aaggtacagtactgtgataactgaaggatgg 73
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 aggtacagtactgtgataactgaaga 64
|||||||||||||||||| |||||||
Sbjct: 43 aggtacagtactgtgatagctgaaga 68
