miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 tggctcagttatcacagtgctgatgctgtctcttgtaaaggtacagtactgtgataactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tggctcagttatcacagtgctgatgctgtctcttgtaaaggtacagtactgtgataactg 65
Query: 61 aaggatggca 70
||||||||||
Sbjct: 66 aaggatggca 75
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 5 tcagttatcacagtgctgatgctgtctcttgtaaaggtacagtactgtgataactgaagg 64
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 10 tcagttatcacagtgctgatgctgtccccatagaaggtacagtactgtgataactgaagg 69
Query: 65 atggc 69
|||||
Sbjct: 70 atggc 74
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 37 aaaggtacagtactgtgataactgaaggatgg 68
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaagaatgg 73
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 37 aaaggtacagtactgtgataactgaaggatggc 69
|||||||||||||||||||| |||||| |||||
Sbjct: 42 aaaggtacagtactgtgatagctgaagaatggc 74
>RF00253;mir-101;AAVX01090491.1/533-606 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 39 aggtacagtactgtgataactgaag 63
|||||||||||||||||| ||||||
Sbjct: 43 aggtacagtactgtgatagctgaag 67
