miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 125 bits (63), Expect = 8e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggcta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggcta 67
Query: 61 tgaaaga 67
|||||||
Sbjct: 68 tgaaaga 74
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggcta 60
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggcta 67
Query: 61 tgaaaga 67
|||||||
Sbjct: 68 tgaaaga 74
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggcta 60
||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggcta 67
Query: 61 tgaaag 66
||||||
Sbjct: 68 tgaaag 73
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggctatgaa 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggcta 60
|||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 67
Query: 61 tgaaag 66
| ||||
Sbjct: 68 tcaaag 73
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggctatga 63
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggctatgaa 64
||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggctatgaa 64
|||||||||||||| |||||||| || | | |||||||||||||||||||||||| ||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 65 agagcag 71
|| ||||
Sbjct: 72 agcgcag 78
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 60.0 bits (30), Expect = 4e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 agcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggctat 61
||||||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatgaaag 66
|||||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaaag 73
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 56.0 bits (28), Expect = 6e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgctgccttgttgcattcatgtcaagcagcattgtacagggcta 60
|||||| ||||||| |||||||||||| || | |||||||||||||||||||||||
Sbjct: 8 ttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggcta 67
Query: 61 tgaa 64
||||
Sbjct: 68 tgaa 71
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatgaa 64
|||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaa 71
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatga 63
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatga 63
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatga 63
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggct 59
||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggct 66
