miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 67
Query: 61 tcaaagcatgg 71
|||||||||||
Sbjct: 68 tcaaagcatgg 78
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 4 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatca 63
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggctatca 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatcaa 64
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatcaa 71
Query: 65 agc 67
|||
Sbjct: 72 agc 74
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 60
|||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggcta 67
Query: 61 tcaaag 66
| ||||
Sbjct: 68 tgaaag 73
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 61
|||||||||||||| ||||||||| | || || ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 69.9 bits (35), Expect = 4e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 59
|||||| |||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 66
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 60
|||||||||||||||||| |||||||| || | | |||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtacagggcta 67
Query: 61 tcaaag 66
| ||||
Sbjct: 68 tgaaag 73
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 60
|||||||||||||||||| || ||||| |||| | |||||||||||||||||||||||
Sbjct: 8 ttcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggcta 67
Query: 61 tcaaag 66
| ||||
Sbjct: 68 tgaaag 73
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 65.9 bits (33), Expect = 6e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 61
|||||| ||||||| |||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 6e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 5 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 61
|||||||||||||| |||||||| |||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 ttcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggcta 60
|||||| ||||||| ||| ||||||||||| | | |||||||||||||||||||||||
Sbjct: 8 ttcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggcta 67
Query: 61 t 61
|
Sbjct: 68 t 68
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 6e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 2 tcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 61
||||| ||||||| ||| |||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctatcaaagca 68
|||||||||||||||||||||||| ||||||
Sbjct: 45 tcaagcagcattgtacagggctatgaaagca 75
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 36 gttcaagcagcattgtacagggctat 61
||||||||||||||||||||||||||
Sbjct: 43 gttcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 36 gttcaagcagcattgtacagggctat 61
||||||||||||||||||||||||||
Sbjct: 43 gttcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 tcaagcagcattgtacagggctat 61
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
