miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||||||||||||
Sbjct: 128 gagaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||||||||||||
Sbjct: 59 gagaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
|||||||||||||||||||||||||| |||||
Sbjct: 99 gagaatcttgatgatgctgcatcagccataaa 130
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||| ||||||||
Sbjct: 110 gagaatcttgatgatgctgcatcggcaataaa 141
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
|||||||||||||||||||||||||| |||||
Sbjct: 98 gagaatcttgatgatgctgcatcagccataaa 129
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||| ||||||||
Sbjct: 131 gagaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||||
Sbjct: 112 gagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||||
Sbjct: 137 gagaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||| ||||||||
Sbjct: 81 gagaatcttgatgatgctgcatcggcaataaa 112
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||||
Sbjct: 91 gagaatcttgatgatgctgcatcagcaa 118
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||||
Sbjct: 81 gagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagca 138
|||||||||||||||||||||||||||
Sbjct: 117 gagaatcttgatgatgctgcatcagca 143
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagca 138
|||||||||||||||||||||||||||
Sbjct: 108 gagaatcttgatgatgctgcatcagca 134
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagc 137
||||||||||||||||||||||||||
Sbjct: 129 gagaatcttgatgatgctgcatcagc 154
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaata 141
||||||||||||||||||||||| ||||||
Sbjct: 90 gagaatcttgatgatgctgcatcggcaata 119
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaata 141
||||||||||||||||||||||| ||||||
Sbjct: 89 gagaatcttgatgatgctgcatcggcaata 118
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaat 140
||||||||||||||||||||||| |||||
Sbjct: 85 gagaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaat 140
|||||||||||||||||||||||| ||||
Sbjct: 78 gagaatcttgatgatgctgcatcaacaat 106
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagca 138
|||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagca 130
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||||||| || |||||
Sbjct: 142 gagaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatca 135
||||||||||||||||||||||||
Sbjct: 84 gagaatcttgatgatgctgcatca 107
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 114 gaatcttgatgatgctgcatcagc 137
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcat 133
||||||||||||||||||||||
Sbjct: 80 gagaatcttgatgatgctgcat 101
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatc 134
|||||||||||||||||||||||
Sbjct: 182 gagaatcttgatgatgctgcatc 204
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaat 140
||||||||||||||||||| |||||||
Sbjct: 67 gaatcttgatgatgctgcaccagcaat 93
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatc 134
|||||||||||||||||||||||
Sbjct: 80 gagaatcttgatgatgctgcatc 102
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcatc 134
|||||||||||||||||||||||
Sbjct: 78 gagaatcttgatgatgctgcatc 100
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||| | ||||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaataaa 201
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||| | ||||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaataaa 144
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||| ||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||||| ||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
|||||||||||||||| |||||||||
Sbjct: 30 gaatcttgatgatgctccatcagcaa 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||| | ||||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaataaa 156
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 gagaatcttgatgatgctgcat 133
||||||||||||||||||||||
Sbjct: 130 gagaatcttgatgatgctgcat 151
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaataaa 143
||||||||||||||||||| | ||||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaataaa 140
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 114 gaatcttgatgatgctgcatcagcaa 139
||||||||||||||||||| ||||||
Sbjct: 82 gaatcttgatgatgctgcaccagcaa 107
