miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccct 64
Query: 61 taccccaaaaagcattcgcggag 83
|||||||||||||||||||||||
Sbjct: 65 taccccaaaaagcattcgcggag 87
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 2 ttcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctt 61
||||||||||||||||||||||||||||||||| ||||| || ||| | |||||||||||
Sbjct: 6 ttcgcgaatctttttgcggtctgggcttgctgttcataagtatctagctgggaagccctt 65
Query: 62 accccaaaaagcattcgcgga 82
||||||||||||||| |||||
Sbjct: 66 accccaaaaagcatttgcgga 86
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 6 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 65
||||||||||||||||||||||||||||| | ||||| | | |||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgttctcaactatcaa--tgggaagcccttaccc 67
Query: 66 caaaaagcattcgcggag 83
||||||||||| ||||||
Sbjct: 68 caaaaagcatttgcggag 85
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttacccca 67
||||||||||||||||||||||||||| || | || | | |||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtttatgaatattaatctgggaagcccttacccca 71
Query: 68 aaaagcattcgcggag 83
||||||||| ||||||
Sbjct: 72 aaaagcatttgcggag 87
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgtacataact 42
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5 cttcgcgaatctttt-gcggtctgggcttgctgtacataact 45
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/66 (87%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccccaaa 69
|||||||||||||||||||||||||| || | | |||| ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtatatga----ccacccaggaagcccttaccccaaa 69
Query: 70 aagcat 75
||||||
Sbjct: 70 aagcat 75
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 6 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 65
||||||||||||||||||||||||||||| |||| | || | ||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtgcata---cacgactctggaagcccttaccc 66
Query: 66 caaaaagcatt 76
|||||||||||
Sbjct: 67 caaaaagcatt 77
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 65.9 bits (33), Expect = 7e-11
Identities = 69/79 (87%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 6 cgaatctttttgcggtctgggcttgctgtaca-taactacctacccgggaagcccttacc 64
||||||||||||||||||||||||||||| || | | || | | ||||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtgcattcatta---atctgggaagcccttacc 66
Query: 65 ccaaaaagcattcgcggag 83
|||||||||||||| ||||
Sbjct: 67 ccaaaaagcattcgtggag 85
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccccaaa 69
||||||||||||||||||||||||| | ||| | || || ||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgttcctaaggaagtagccaggaagcccttaccccaaa 73
Query: 70 aag 72
|||
Sbjct: 74 aag 76
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 cttcgcgaatctttttgcggtctgggcttgctgt 34
|||| |||||||||||||||||||||||||||||
Sbjct: 5 cttcacgaatctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 gaatctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||||
Sbjct: 11 gaatctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 cgggaagcccttaccccaaaaagcatt 76
|||||||||||||||||||||||||||
Sbjct: 56 cgggaagcccttaccccaaaaagcatt 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aatctttttgcggtctgggcttgct 32
|||||||||||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgct 37
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 78 atctttttgcggtctgggcttgctgt 53
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 11 atctttttgcggtctgggcttgctgt 36
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 atctttttgcggtctgggcttgctgt 34
||||||||||||||||||||||||||
Sbjct: 13 atctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaagcattcgcgg 81
||||||||||||||||||||| || |||||
Sbjct: 57 ggaagcccttaccccaaaaagtatccgcgg 86
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tctttttgcggtctgggcttgctgt 34
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaagcat 75
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 ggaagcccttaccccaaaaagcat 75
||||||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaagcat 76
>RF00486;mir-129;AAWZ01021483.1/628-534 28377:Anolis carolinensis
(green anole)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 aagcccttaccccaaaaagcat 75
||||||||||||||||||||||
Sbjct: 62 aagcccttaccccaaaaagcat 83
