miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 agagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggc 68
Query: 61 attggctggca 71
|||||||||||
Sbjct: 69 attggctggca 79
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 3 agccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcat 62
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 9 agccctttttctgttgtactactgtgaaatcagatgagcagtgcaatattaaaagggcat 68
Query: 63 tggctg 68
||||||
Sbjct: 69 tggctg 74
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 71
Query: 64 ggctg 68
|||||
Sbjct: 72 ggctg 76
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgcactactggacattgggatgagcagtgcaatattaaaagggcatt 71
Query: 64 ggctg 68
|||||
Sbjct: 72 ggctg 76
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactg-gcaattatgatgagcagtgcaatattaaaagggcat 62
||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatattaaaagggcat 70
Query: 63 tggctg 68
||||||
Sbjct: 71 tggctg 76
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
|||||||| || ||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 12 gcccttttcctcttgcactactggacattgagatgagcagtgcaatattaaaagggcatt 71
Query: 64 ggctg 68
|||||
Sbjct: 72 ggctg 76
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggctggca 71
|||||||||||||||||||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggctggca 80
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcattggctg 68
|||||||||||||||||||||||||||||||
Sbjct: 46 gagcagtgcaatattaaaagggcattggctg 76
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 2 gagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggca 61
|||||||||||||||||| |||||| || | | ||||||||||||| |||||||||||
Sbjct: 10 gagccctttttctgttgtgctactgtgaaatcaggtgagcagtgcaattttaaaagggca 69
Query: 62 t 62
|
Sbjct: 70 t 70
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 33 agcagtgcaatgttaaaagggcattggc 6
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia
guttata
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggc 77
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattggc 66
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 gcagtgcaatattaaaagggcattggc 66
|||||||||| ||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggc 74
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 39 agcagtgcaatattaaaagggcattgg 65
||||||||||| |||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattgg 76
>RF00258;mir-130;AAPN01407153.1/607-682 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 42.1 bits (21), Expect = 9e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcattggctggc 70
|||||||||||| ||||||||||| |||||||
Sbjct: 43 gagcagtgcaatggtaaaagggcatcggctggc 75
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gagcagtgcaatattaaaagggcat 62
|||||||||||| ||||||||||||
Sbjct: 48 gagcagtgcaatgttaaaagggcat 72
