miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;ABQF01026522.1/2438-2357 59729:Taeniopygia guttata
Length = 82
Score = 163 bits (82), Expect = 6e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 30 tctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaat 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaat 60
Query: 90 gttaaaagggcattggccagca 111
||||||||||||||||||||||
Sbjct: 61 gttaaaagggcattggccagca 82
>RF00258;mir-130;AAPN01410230.1/3519-3435 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 30 tctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaat 89
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2 tctgtctagtgccctttttatgttgtactactagtgatcttgcacaaaaagcagtgcaat 61
Query: 90 gttaaaagggcattggccag 109
||||||||||||||||||||
Sbjct: 62 gttaaaagggcattggccag 81
>RF00258;mir-130;AAWZ01039186.1/8009-8092 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 127 bits (64), Expect = 3e-29
Identities = 79/84 (94%)
Strand = Plus / Minus
Query: 28 tgtctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgca 87
|||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||||
Sbjct: 84 tgtctgtccactgccctttttatgttgtactactagtgaacatgcgcaaaaagcagtgca 25
Query: 88 atgttaaaagggcattggccagca 111
||||||||||||||||||||||||
Sbjct: 24 atgttaaaagggcattggccagca 1
>RF00258;mir-130;AAFR03045417.1/53001-53085 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 115 bits (58), Expect = 1e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 32 tgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaatgt 91
|||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 4 tgtctagtgccctttttatgttgtactactagtgatcctgcacaagaagcagtgcaatgt 63
Query: 92 taaaagggcattggccag 109
||||||||||||||||||
Sbjct: 64 taaaagggcattggccag 81
>RF00258;mir-130;AADN02025792.1/1337-1416 9031:Gallus gallus
(chicken)
Length = 80
Score = 107 bits (54), Expect = 3e-23
Identities = 75/81 (92%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 31 ctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaatg 90
|||||||| |||||||||||||||||||||| ||||| || |||||| |||||||||||
Sbjct: 1 ctgtccagcgccctttttatgttgtactactagtgatcatacacaaa--gcagtgcaatg 58
Query: 91 ttaaaagggcattggccagca 111
|||||||||||||||||||||
Sbjct: 59 ttaaaagggcattggccagca 79
>RF00258;mir-130;AC091299.2/31403-31320 7955:Danio rerio (zebrafish)
Length = 84
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 77 aaagcagtgcaatgttaaaagggcattggccag 109
|||||||||||||||||||||||||||||||||
Sbjct: 49 aaagcagtgcaatgttaaaagggcattggccag 81
>RF00258;mir-130;ABRQ01005074.1/1153-1071 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggccag 109
|||||||||||||||||||||||||||||||
Sbjct: 50 agcagtgcaatgttaaaagggcattggccag 80
>RF00258;mir-130;AAFR03064223.1/4789-4711 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 80 gcagtgcaatgttaaaagggcattggcc 107
||||||||||||||||||||||||||||
Sbjct: 48 gcagtgcaatgttaaaagggcattggcc 75
>RF00258;mir-130;AAWZ01013434.1/100052-99970 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 78 aagcagtgcaatgttaaaagggcattgg 105
||||||||||||||||||||||||||||
Sbjct: 49 aagcagtgcaatgttaaaagggcattgg 76
>RF00258;mir-130;AANH01000530.1/26463-26380 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 77 aaagcagtgcaatgttaaaagggcattggcc 107
|||||||||||| ||||||||||||||||||
Sbjct: 49 aaagcagtgcaacgttaaaagggcattggcc 79
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 52.0 bits (26), Expect = 2e-06
Identities = 63/75 (84%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 32 tgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaagcagtgcaatgt 91
||||||| ||||||||| |||||||||||||| || ||| | ||||||||||| |
Sbjct: 4 tgtccagagccctttttctgttgtactactggcaattatg----atgagcagtgcaatat 59
Query: 92 taaaagggcattggc 106
|||||||||||||||
Sbjct: 60 taaaagggcattggc 74
>RF00258;mir-130;AL928914.15/23540-23459 10090:Mus musculus (house
mouse)
Length = 82
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggcc 107
|||||||||||||||||||||||| ||||
Sbjct: 49 agcagtgcaatgttaaaagggcatcggcc 77
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 78 aagcagtgcaatgttaaaagggcattggc 106
|||||||||||| ||||||||||||||||
Sbjct: 47 aagcagtgcaatattaaaagggcattggc 75
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 tgtccagtgccctttttatgttgtactactgg 63
|||||| |||||||||| ||||||||||||||
Sbjct: 4 tgtccattgccctttttctgttgtactactgg 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 45 agcagtgcaatattaaaagggcattggc 72
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggc 106
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>RF00258;mir-130;BAAE01186101.1/50-128 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 79 agcagtgcaatgttaaaagggcattggcca 108
||||||||||| |||||||||||| |||||
Sbjct: 47 agcagtgcaattttaaaagggcatcggcca 76
