miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 133 bits (67), Expect = 3e-31
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ctggctggtcaaacggaaccaagcccgtcttcctcggaggtttggtccccttcaaccagc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 ctggctggtcaaacggaaccaagcccgtcttcttcggaggtttggtccccttcaaccagc 71
Query: 61 tatagcagtgt 71
|||||||||||
Sbjct: 72 tatagcagtgt 82
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 ctggctggtcaaacggaaccaagcccgtcttcctcggaggtttggtccccttcaaccagc 60
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 12 ctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttcaaccagc 71
Query: 61 tatagcag 68
|| |||||
Sbjct: 72 tacagcag 79
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1 ctggctggtcaaacggaaccaagcccgtcttcctcggaggtttggtccccttcaaccagc 60
||||||||||||| ||||||| | | |||||||| | ||||||||||||||| |||||||
Sbjct: 12 ctggctggtcaaagggaaccacggctgtcttccttgaaggtttggtcccctttaaccagc 71
Query: 61 tatagcagt 69
|| ||||||
Sbjct: 72 tacagcagt 80
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 2 tggctggtcaaacggaaccaagcccg-tcttcctcggaggtttggtccccttcaaccagc 60
|||||||||||||||||||||| | | | || || ||||||||||||||||||||||||
Sbjct: 13 tggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagc 72
Query: 61 ta 62
||
Sbjct: 73 ta 74
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 gaggtttggtccccttcaaccagcta 62
||||||||||||||||||||||||||
Sbjct: 49 gaggtttggtccccttcaaccagcta 74
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 71 tttggtccccttcaaccagctgtagcagtg 100
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 69 tttggtccccttcaaccagctgtagcagtg 98
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 56 tttggtccccttcaaccagctgtagcagtg 85
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 53 tttggtccccttcaaccagctgtagcagtg 82
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 51 tttggtccccttcaaccagctgtagcagtg 80
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| ||||||||
Sbjct: 50 tttggtccccttcaaccagctgtagcagtg 79
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ggtttggtccccttcaaccagcta 62
||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagcta 68
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 ggtttggtccccttcaaccagct 61
|||||||||||||||||||||||
Sbjct: 54 ggtttggtccccttcaaccagct 76
>RF00446;mir-133;AAQA01000068.1/106410-106501 6279:Brugia malayi
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 ttggtccccttcaaccagctat 63
||||||||||||||||||||||
Sbjct: 57 ttggtccccttcaaccagctat 78
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 gaggtttggtccccttcaaccagcta 62
||||||||||||| ||||||||||||
Sbjct: 47 gaggtttggtccctttcaaccagcta 72
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 36 tttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagcagtg 70
||||||||||||||||||||| || |||||
Sbjct: 52 tttggtccccttcaaccagctgtatcagtg 81
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagctatagc 66
||||||||||||||||||||| ||||
Sbjct: 50 tttggtccccttcaaccagctgtagc 75
>RF00446;mir-133;ABIR01002879.1/58014-58104 6334:Trichinella
spiralis
Length = 91
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 ttggtccccttcaaccagcta 62
|||||||||||||||||||||
Sbjct: 56 ttggtccccttcaaccagcta 76
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 51 tttggtccccttcaaccagct 71
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 50 tttggtccccttcaaccagct 70
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 54 tttggtccccttcaaccagct 74
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 53 tttggtccccttcaaccagct 73
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 55 tttggtccccttcaaccagct 75
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 72 tttggtccccttcaaccagct 92
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 48 tttggtccccttcaaccagct 68
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tttggtccccttcaaccagct 61
|||||||||||||||||||||
Sbjct: 71 tttggtccccttcaaccagct 91
