miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 74
Query: 61 actttatggat 71
|||||||||||
Sbjct: 75 actttatggat 85
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 117 bits (59), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 15 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 73
Query: 61 actttatggat 71
|||||||||||
Sbjct: 74 actttatggat 84
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 117 bits (59), Expect = 2e-26
Identities = 69/71 (97%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 15 tgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcct 73
Query: 61 actttatggat 71
|||||||||||
Sbjct: 74 actttatggat 84
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 85.7 bits (43), Expect = 7e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 5 gtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactt 64
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 65 tatggat 71
|||||||
Sbjct: 79 tatggat 85
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
||||||||| ||||||||||| ||||||||||||| | || || ||||||||||||||
Sbjct: 15 tgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcct 74
Query: 61 actttatggat 71
|||||||||||
Sbjct: 75 actttatggat 85
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 69.9 bits (35), Expect = 4e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 15 tgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtttcct 74
Query: 61 actttatggat 71
|||||||||||
Sbjct: 75 actttatggat 85
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 61.9 bits (31), Expect = 9e-10
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
|||||||| |||||||||||||||||||||||| || | || ||||||||||||||
Sbjct: 15 tgcagtcatccataaagtagaaagcactactaaccatccaatca--gtgtagtgtttcct 72
Query: 61 actttatgga 70
||||||||||
Sbjct: 73 actttatgga 82
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 54.0 bits (27), Expect = 2e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 10 ccataaagtagaaagcactactaaacagcactg-cagggtgtagtgtttcctactttatg 68
|||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct: 24 ccataaagtagaaagcactactaaacgcctgtgcccaagtgtagtgtttcctactttatg 83
Query: 69 gat 71
|||
Sbjct: 84 gat 86
