miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00682;mir-144;ABQF01026376.1/1068-984 59729:Taeniopygia guttata
Length = 85
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gcaggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gcaggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 71
Query: 61 ccccgggctg 70
||||||||||
Sbjct: 72 ccccgggctg 81
>RF00682;mir-144;ABQO010853698.1/933-849 9315:Macropus eugenii
(tammar wallaby)
Length = 85
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 2 caggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 13 caggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AAFR03044825.1/5551-5467 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;AADN02025858.1/339-423 9031:Gallus gallus
(chicken)
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtactccc 63
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtactccc 74
Query: 64 c 64
|
Sbjct: 75 c 75
>RF00682;mir-144;AAGU02141945.1/2203-2119 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
>RF00682;mir-144;BC152081.1/387-472 7955:Danio rerio (zebrafish)
Length = 86
Score = 79.8 bits (40), Expect = 4e-15
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 2 caggatatcatcgtatactgtaagttggctat-gagacactacagtatagatgatgtact 60
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 13 caggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtact 72
>RF00682;mir-144;BAAF04033966.1/3629-3714 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 2 caggatatcatcgtatactgtaagttggctat-gagacactacagtatagatgatgtact 60
|||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 13 caggatatcatcttatactgtaagtttaataaagagacactacagtatagatgatgtact 72
>RF00682;mir-144;AAVX01587350.1/53-138 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 agacactacagtatagatgatgtact 60
||||||||||||||||||||||||||
Sbjct: 47 agacactacagtatagatgatgtact 72
