miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00248;mir-148;AADN02000964.1/27361-27276 9031:Gallus gallus
(chicken)
Length = 86
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 33 ctccggaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactac 92
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 5 ctcctgaagcaaagttctgtgacactcagactctggttacgatagcagtcagtgcactac 64
Query: 93 agaactttgtctccgg 108
||||||||||||||||
Sbjct: 65 agaactttgtctccgg 80
>RF00248;mir-148;AAGU02053377.1/4604-4519 9785:Loxodonta africana
(African savanna elephant)
Length = 86
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 41 gcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaacttt 100
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 13 gcaaagttctgagacactccgactctgagtatgatagaagtcagtgcactacagaacttt 72
Query: 101 gtctc 105
|||||
Sbjct: 73 gtctc 77
>RF00248;mir-148;AAWZ01008895.1/29849-29934 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 37 ggaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacagaa 96
||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||
Sbjct: 9 ggaagcaaagttctgtgacactcggactctgattatgatagaagtcagtgcactacagaa 68
Query: 97 ctttgtctccgg 108
||||||| ||||
Sbjct: 69 ctttgtcgccgg 80
>RF00248;mir-148;AAFR03047726.1/72700-72785 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 89.7 bits (45), Expect = 7e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 36 cggaagcaaagttctgtgacactccgactctgggtacgatagcagtcagtgcactacaga 95
|||| ||||||||||| ||||||| ||||||| || ||||| |||||||||||||||||
Sbjct: 8 cggaggcaaagttctgggacactcagactctgattaggatagaagtcagtgcactacaga 67
Query: 96 actttgtctccgg 108
|||||||||||||
Sbjct: 68 actttgtctccgg 80
>RF00248;mir-148;AALT01103337.1/950-865 42254:Sorex araneus
(European shrew)
Length = 86
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 53 gacactccgactctgggtacgatagcagtcagtgcactacagaactttgtctc 105
||||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct: 25 gacactccgactctgagtaggatagcagtcagtgcactacagaattttgtctc 77
>RF00248;mir-148;ABQO010009990.1/1-63 9315:Macropus eugenii (tammar
wallaby)
Length = 63
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 agtcagtgcactacagaactttgtc 103
|||||||||||||||||||||||||
Sbjct: 39 agtcagtgcactacagaactttgtc 63
>RF00248;mir-148;CU104777.4/16075-15990 7955:Danio rerio (zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 49 gcagtcagtgcattacagaactttgt 74
>RF00248;mir-148;CAAB01000281.1/110896-110981 31033:Takifugu
rubripes
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 49 gcagtcagtgcattacagaactttgt 74
>RF00248;mir-148;ABPM01044053.1/712-797 106582:Maylandia zebra
(zebra mbuna)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 49 gcagtcagtgcattacagaactttgt 74
>RF00248;mir-148;BAAE01176122.1/4975-4889 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gcagtcagtgcactacagaactttgt 102
|||||||||||| |||||||||||||
Sbjct: 50 gcagtcagtgcattacagaactttgt 75
