miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 135 bits (68), Expect = 8e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 72
Query: 61 tcattgga 68
||||||||
Sbjct: 73 tcattgga 80
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 13 tgtcatttttgtgat-ttgcagctagtaatcctggcccagttgcatagtcacaaaagtga 71
Query: 61 tcattgg 67
|||||||
Sbjct: 72 tcattgg 78
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 75.8 bits (38), Expect = 6e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 2 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 72
Query: 62 cattgg 67
| ||||
Sbjct: 73 cgttgg 78
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
||||||||||||||| | |||||||||| | | | ||||||||||||||||||||||||
Sbjct: 13 tgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaaaagtga 71
Query: 61 tcattgg 67
|||||||
Sbjct: 72 tcattgg 78
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
||||||||||||| | |||||||||||| | || |||||||||||||||||||| |||
Sbjct: 13 tgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaaatga 71
Query: 61 tcattgg 67
||||||
Sbjct: 72 gcattgg 78
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 56
||||||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct: 13 tgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 37 ccagttgcatagtcacaaaagtgatcat 64
|||||||||||||||||||| |||||||
Sbjct: 48 ccagttgcatagtcacaaaaatgatcat 75
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgat 61
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgatcat 64
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
>RF00650;mir-153;ABJB010903342.1/3344-3261 6945:Ixodes scapularis
(black-legged tick)
Length = 84
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 51 ttgcatagtcacaaaagtgat 71
